Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 2
- mitochondrion 3
- plastid 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc01g008970.2.1 | Tomato | nucleus | 38.02 | 43.88 |
KRH66628 | Soybean | nucleus | 47.7 | 42.59 |
GSMUA_Achr6P15950_001 | Banana | nucleus | 44.93 | 41.85 |
VIT_08s0056g00690.t01 | Wine grape | nucleus | 43.78 | 41.04 |
Bra014667.1-P | Field mustard | nucleus | 28.8 | 40.98 |
KRG94993 | Soybean | nucleus | 45.16 | 40.92 |
CDX76015 | Canola | nucleus | 28.57 | 40.66 |
HORVU6Hr1G054690.5 | Barley | plastid | 17.28 | 39.89 |
CDX72106 | Canola | nucleus | 41.71 | 39.78 |
CDY06947 | Canola | nucleus | 39.17 | 39.53 |
CDY27186 | Canola | nucleus | 40.32 | 38.98 |
Bra007277.1-P | Field mustard | nucleus | 40.32 | 38.98 |
Bra016954.1-P | Field mustard | nucleus | 39.17 | 38.64 |
PGSC0003DMT400058431 | Potato | nucleus | 43.55 | 38.57 |
KRH14673 | Soybean | nucleus | 43.78 | 38.46 |
KRH73477 | Soybean | nucleus | 43.78 | 38.31 |
CDY57580 | Canola | nucleus | 38.94 | 38.15 |
AT2G41060.3 | Thale cress | nucleus | 39.17 | 37.69 |
AT3G56860.10 | Thale cress | nucleus | 41.01 | 37.24 |
VIT_06s0009g01180.t01 | Wine grape | mitochondrion, nucleus, plastid | 44.24 | 37.07 |
GSMUA_Achr10P... | Banana | nucleus | 19.59 | 36.8 |
KXG30578 | Sorghum | nucleus | 31.34 | 36.56 |
Os02t0602600-00 | Rice | nucleus | 30.65 | 34.46 |
GSMUA_Achr5P09550_001 | Banana | nucleus | 28.11 | 32.8 |
GSMUA_AchrUn_... | Banana | nucleus | 31.34 | 31.7 |
GSMUA_Achr4P09210_001 | Banana | nucleus | 32.03 | 31.45 |
GSMUA_Achr5P09540_001 | Banana | nucleus | 27.88 | 31.19 |
GSMUA_Achr5P17700_001 | Banana | cytosol | 6.45 | 30.11 |
GSMUA_Achr9P12410_001 | Banana | nucleus | 22.35 | 28.96 |
GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 10.6 | 28.93 |
CDY47382 | Canola | golgi, plastid | 26.96 | 28.12 |
EES10068 | Sorghum | nucleus | 27.19 | 27.38 |
GSMUA_Achr4P09830_001 | Banana | mitochondrion | 9.45 | 27.15 |
GSMUA_Achr9P14920_001 | Banana | plastid | 10.83 | 26.55 |
GSMUA_Achr7P00730_001 | Banana | cytosol | 9.45 | 22.65 |
GSMUA_Achr10P... | Banana | nucleus | 12.67 | 22.18 |
GSMUA_Achr9P12880_001 | Banana | cytosol | 10.37 | 19.57 |
GSMUA_AchrUn_... | Banana | mitochondrion | 10.83 | 19.5 |
GSMUA_Achr3P21850_001 | Banana | nucleus | 11.75 | 19.47 |
GSMUA_Achr8P23460_001 | Banana | nucleus | 10.37 | 19.07 |
GSMUA_Achr4P32300_001 | Banana | nucleus | 6.45 | 19.05 |
GSMUA_Achr7P13480_001 | Banana | nucleus | 14.75 | 18.99 |
GSMUA_Achr8P08440_001 | Banana | nucleus | 11.29 | 18.92 |
GSMUA_Achr5P05400_001 | Banana | mitochondrion | 11.29 | 18.56 |
GSMUA_Achr10P... | Banana | nucleus | 14.06 | 18.32 |
GSMUA_AchrUn_... | Banana | cytosol | 13.82 | 18.24 |
GSMUA_Achr8P24330_001 | Banana | nucleus, plastid | 11.98 | 17.93 |
GSMUA_Achr1P19260_001 | Banana | nucleus | 13.82 | 17.75 |
GSMUA_Achr10P... | Banana | nucleus | 11.06 | 17.71 |
GSMUA_Achr2P14710_001 | Banana | cytosol | 14.52 | 17.55 |
GSMUA_Achr6P17510_001 | Banana | cytosol, mitochondrion, nucleus | 10.83 | 17.41 |
GSMUA_Achr11P... | Banana | nucleus | 10.37 | 16.98 |
GSMUA_Achr1P09440_001 | Banana | cytosol | 13.13 | 16.81 |
GSMUA_Achr10P... | Banana | nucleus | 16.36 | 16.14 |
GSMUA_Achr3P13820_001 | Banana | cytosol | 10.37 | 16.13 |
GSMUA_Achr4P33100_001 | Banana | nucleus | 16.13 | 15.84 |
GSMUA_Achr10P... | Banana | nucleus | 16.59 | 15.65 |
GSMUA_Achr4P24260_001 | Banana | cytosol | 11.75 | 15.5 |
GSMUA_Achr8P25380_001 | Banana | nucleus | 13.36 | 15.3 |
GSMUA_Achr6P10970_001 | Banana | nucleus | 16.59 | 14.4 |
GSMUA_Achr1P10970_001 | Banana | nucleus | 13.59 | 13.53 |
GSMUA_Achr4P28100_001 | Banana | nucleus | 12.9 | 12.67 |
GSMUA_Achr3P02300_001 | Banana | nucleus | 16.36 | 10.46 |
GSMUA_Achr5P17690_001 | Banana | nucleus | 9.68 | 10.4 |
GSMUA_Achr6P24180_001 | Banana | cytosol | 11.29 | 7.35 |
Protein Annotations
EnsemblPlants:GSMUA_Achr10P00440_001 | EnsemblPlants:GSMUA_Achr10T00440_001 | EnsemblPlantsGene:GSMUA_Achr10G00440_001 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
InterPro:RRM_dom | ncoils:Coil | PANTHER:PTHR44578 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg |
SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000295A348 | UniProt:M0RE71 | MapMan:35.1 | : |
Description
Putative Heterogeneous nuclear ribonucleoprotein A/B [Source:GMGC_GENE;Acc:GSMUA_Achr10G00440_001]
Coordinates
chr10:-:1004776..1006236
Molecular Weight (calculated)
47375.6 Da
IEP (calculated)
4.330
GRAVY (calculated)
-0.479
Length
434 amino acids
Sequence
(BLAST)
(BLAST)
001: MYAYIYILYK KRSPLRKPPV QIPEPSSSEE EEAEEEVEEV EEVEEVEEEG SEEEEEEEEE EEEEVEEEDE AQDQEEEKKA KSEEKEEQVE VEEADVLDRE
101: SIRKLLEPFG KDQLIELLKE AALRNPSLLS QIASAADSDP VHRKIFVHGL GWDATTEVLA AAFTTYGVID ECKVVTDRAT GRCKGYGFVL FRTRAAAQRA
201: LLEPQKKIGN RMTSCQLASF GPPGAQGPAP EVTGRKIFVS NIGEHVNPER LRAFFAKFGE IEEGPLGYDK TTGKLRGFAI FVYKTVEGCR KALEEPKKFF
301: EGCELSCQRA VEGLKPKNQA IGGANVPAML QPNDLALTYA SQSLMGLNPV AGLVGQSLNP AVGLLGQNVG VGVLNQGGTG VNSISPSVIG SYQSQVALQG
401: LGAYQNSYLS SSTGVRSKSD IGSLGNGLPP YFGR
101: SIRKLLEPFG KDQLIELLKE AALRNPSLLS QIASAADSDP VHRKIFVHGL GWDATTEVLA AAFTTYGVID ECKVVTDRAT GRCKGYGFVL FRTRAAAQRA
201: LLEPQKKIGN RMTSCQLASF GPPGAQGPAP EVTGRKIFVS NIGEHVNPER LRAFFAKFGE IEEGPLGYDK TTGKLRGFAI FVYKTVEGCR KALEEPKKFF
301: EGCELSCQRA VEGLKPKNQA IGGANVPAML QPNDLALTYA SQSLMGLNPV AGLVGQSLNP AVGLLGQNVG VGVLNQGGTG VNSISPSVIG SYQSQVALQG
401: LGAYQNSYLS SSTGVRSKSD IGSLGNGLPP YFGR
001: MTKKRKLEGE ESNEAEEPSQ KLKQTPEEEQ QLVIKNQDNQ GDVEEVEYEE VEEEQEEEVE DDDDEDDGDE NEDQTDGNRI EAAATSGSGN QEDDDDEPIQ
101: DLLEPFSKEQ VLSLLKEAAE KHVDVANRIR EVADEDPVHR KIFVHGLGWD TKTETLIEAF KQYGEIEDCK AVFDKISGKS KGYGFILYKS RSGARNALKQ
201: PQKKIGSRMT ACQLASKGPV FGGAPIAAAA VSAPAQHSNS EHTQKKIYVS NVGAELDPQK LLMFFSKFGE IEEGPLGLDK YTGRPKGFCL FVYKSSESAK
301: RALEEPHKTF EGHILHCQKA IDGPKPGKQQ QHHHNPHAYN NPRYQRNDNN GYGPPGGHGH LMAGNPAGMG GPTAQVINPA IGQALTALLA SQGAGLAFNP
401: AIGQALLGSL GTAAGVNPGN GVGMPTGYGT QAMAPGTMPG YGTQPGLQGG YQTPQPGQGG TSRGQHGVGP YGTPYMGH
101: DLLEPFSKEQ VLSLLKEAAE KHVDVANRIR EVADEDPVHR KIFVHGLGWD TKTETLIEAF KQYGEIEDCK AVFDKISGKS KGYGFILYKS RSGARNALKQ
201: PQKKIGSRMT ACQLASKGPV FGGAPIAAAA VSAPAQHSNS EHTQKKIYVS NVGAELDPQK LLMFFSKFGE IEEGPLGLDK YTGRPKGFCL FVYKSSESAK
301: RALEEPHKTF EGHILHCQKA IDGPKPGKQQ QHHHNPHAYN NPRYQRNDNN GYGPPGGHGH LMAGNPAGMG GPTAQVINPA IGQALTALLA SQGAGLAFNP
401: AIGQALLGSL GTAAGVNPGN GVGMPTGYGT QAMAPGTMPG YGTQPGLQGG YQTPQPGQGG TSRGQHGVGP YGTPYMGH
Arabidopsis Description
UBA2AUBP1-associated protein 2A [Source:UniProtKB/Swiss-Prot;Acc:Q9LES2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.