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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus, plastid
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
 nucleus: 21132161
endoplasmic reticulum: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH73477 Soybean nucleus 92.11 91.73
VIT_06s0009g01180.t01 Wine grape mitochondrion, nucleus, plastid 60.73 57.92
PGSC0003DMT400058431 Potato nucleus 57.09 57.55
Solyc01g008970.2.1 Tomato nucleus 43.12 56.65
KRG94993 Soybean nucleus 49.39 50.94
KRH66628 Soybean nucleus 49.8 50.62
GSMUA_Achr6P15950_001 Banana nucleus 47.17 50.0
TraesCS3B01G211700.1 Wheat nucleus 42.11 45.92
Zm00001d040344_P001 Maize extracellular, plasma membrane 42.11 45.81
TraesCS3D01G186500.1 Wheat nucleus 44.13 45.42
TraesCS3A01G181900.1 Wheat nucleus 43.93 45.21
HORVU3Hr1G037280.1 Barley nucleus, plastid 44.33 44.88
Os01t0265800-01 Rice nucleus 43.93 44.29
GSMUA_Achr10P... Banana mitochondrion, nucleus 38.46 43.78
EES02736 Sorghum plastid 41.09 43.75
GSMUA_Achr10P... Banana nucleus 18.02 38.53
GSMUA_AchrUn_... Banana nucleus 29.96 34.5
KRH71299 Soybean nucleus 26.52 34.11
HORVU6Hr1G054690.5 Barley plastid 12.96 34.04
KRH50169 Soybean nucleus 26.32 33.85
GSMUA_Achr4P09210_001 Banana nucleus 29.76 33.26
HORVU2Hr1G116150.4 Barley nucleus 26.92 32.13
TraesCS2D01G529100.1 Wheat nucleus 32.19 31.24
TraesCS2B01G556700.1 Wheat nucleus 32.19 31.24
TraesCS2A01G526400.1 Wheat nucleus 32.19 31.24
KRH55109 Soybean nucleus 27.73 30.86
Os04t0636900-02 Rice nucleus 31.98 30.68
KRH26210 Soybean nucleus 27.13 30.66
KRH75298 Soybean cytosol, nucleus 6.07 30.3
Zm00001d002141_P006 Maize nucleus 31.58 29.94
KXG30578 Sorghum nucleus 22.47 29.84
Os02t0602600-00 Rice nucleus 23.28 29.79
EES12939 Sorghum nucleus 31.78 29.79
Zm00001d026397_P001 Maize nucleus, plasma membrane 31.38 29.75
KRG95365 Soybean nucleus 19.23 28.27
KRH13261 Soybean cytosol 7.09 28.23
KRH67043 Soybean nucleus 19.23 27.94
KRH07772 Soybean cytosol 5.06 25.51
EES10068 Sorghum nucleus 21.05 24.13
KRH56541 Soybean nucleus 9.31 23.0
HORVU2Hr1G116230.1 Barley nucleus 18.83 22.91
KRG94084 Soybean nucleus 16.4 21.66
KRH07154 Soybean nucleus 15.99 21.24
KRH64318 Soybean nucleus 10.93 21.01
KRH51553 Soybean nucleus, plastid 12.15 20.98
KRH60871 Soybean nucleus, plastid 12.15 20.98
KRH17717 Soybean nucleus 14.78 20.74
KRH47731 Soybean nucleus 11.13 20.6
KRH53608 Soybean nucleus 9.92 19.92
KRH16743 Soybean nucleus 10.93 19.71
KRH06306 Soybean nucleus 10.73 19.7
KRG93213 Soybean nucleus 14.98 19.63
KRH18921 Soybean nucleus 10.93 19.57
KRH28467 Soybean cytosol 14.37 19.45
KRH47819 Soybean nucleus 11.54 19.26
KRH62327 Soybean nucleus 11.13 19.16
KRH23771 Soybean nucleus 10.53 19.12
KRH62942 Soybean mitochondrion 7.89 19.12
KRH77004 Soybean nucleus 13.97 19.06
KRH06384 Soybean nucleus 11.54 18.94
KRH40033 Soybean nucleus 10.32 18.75
KRH23293 Soybean nucleus 13.36 18.7
KRH73860 Soybean nucleus 17.21 17.82
KRH53044 Soybean nucleus 10.32 17.77
KRH14284 Soybean nucleus 17.0 17.57
KRH46297 Soybean nucleus 16.8 17.33
KRH47808 Soybean nucleus 9.92 17.13
KRH06373 Soybean nucleus 9.51 16.97
KRG98573 Soybean nucleus 16.19 16.7
KRH74025 Soybean nucleus 15.79 16.42
KRH61448 Soybean nucleus 12.75 16.41
KRH14098 Soybean nucleus 15.59 16.08
KRH52137 Soybean nucleus 12.15 15.87
KRH05541 Soybean cytosol, endoplasmic reticulum 9.92 15.12
KRG92276 Soybean endoplasmic reticulum 14.37 14.92
KRH34534 Soybean nucleus 14.17 14.86
Protein Annotations
EntrezGene:100783742Gene3D:3.30.70.330MapMan:35.1EMBL:ACUP02008514ncoils:CoilEnsemblPlantsGene:GLYMA_14G040800
GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0005488UniProt:I1M798InterPro:IPR000504
InterPro:IPR012677EnsemblPlants:KRH14673ProteinID:KRH14673ProteinID:KRH14673.1ProteinID:KRH14674.1InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076PFscan:PS50102PANTHER:PTHR44578PANTHER:PTHR44578:SF4InterPro:RBD_domain_sfInterPro:RRM_dom
SMART:SM00360SUPFAM:SSF54928UniParc:UPI000233BCBCSEG:seg::
Description
hypothetical protein
Coordinates
chr14:+:3060145..3064752
Molecular Weight (calculated)
53902.3 Da
IEP (calculated)
4.907
GRAVY (calculated)
-0.973
Length
494 amino acids
Sequence
(BLAST)
001: MAKKRKLRSS DPEPTKPIEP QQQDQEPVEL DQQQQQPNPE QTLEDPNTMA VDEPKQEEEE EDEEPQNAES EEEEEEAEEQ QEERPPETLE EQQDPETLAA
101: ANHAEVNGGN EGNNEEEEEE DLTLEEEPVE KLLEPFTKEQ LHSLVTQAVD MFPEFVDSVR RLADVDPAHR KIFVHGLGWD ATADTLTAVF GKYGEIEDCK
201: AVTDKVSGKS KGYAFILFKH RDDARKALKH PQKKIGNRTT SCQLASAGPV PAPPPNVTPV SEYTQRKIFV SNVNAEIDPQ KLLEFFKQFG EVEDGPLGLD
301: KNTGKPKGFA LFVYKSVESA KKALEEPHKN YEGHTLYCQK AVDGPKGSKG YHHQQHSHPH HHHHHQPHYQ RKEKNKYSSG GGGPSHGSGH LMAPSGSAVG
401: GFNPGLPAQG LNPALGQALT ALINQGAGLG LGNLLGGLGG APVNQAGPPA PYANQPAMGY GNQPAMQPGY QNPQMGQGSG VRPHPGAGAP YMGH
Best Arabidopsis Sequence Match ( AT2G41060.2 )
(BLAST)
001: MTKKRKLESE SNETSEPTEK QQQQCEKEDP EIRNVDNQRD DDEQVVEQDT LKEMHEEEAK GEDNIEAETS SGSGNQGNED DDEEEPIEDL LEPFSKDQLL
101: ILLKEAAERH RDVANRIRIV ADEDLVHRKI FVHGLGWDTK ADSLIDAFKQ YGEIEDCKCV VDKVSGQSKG YGFILFKSRS GARNALKQPQ KKIGTRMTAC
201: QLASIGPVQG NPVVAPAQHF NPENVQRKIY VSNVSADIDP QKLLEFFSRF GEIEEGPLGL DKATGRPKGF ALFVYRSLES AKKALEEPHK TFEGHVLHCH
301: KANDGPKQVK QHQHNHNSHN QNSRYQRNDN NGYGAPGGHG HFIAGNNQAV QAFNPAIGQA LTALLASQGA GLGLNQAFGQ ALLGTLGTAS PGAVGGMPSG
401: YGTQANISPG VYPGYGAQAG YQGGYQTQQP GQGGAGRGQH GAGYGGPYMG R
Arabidopsis Description
UBA2BUBP1-associated protein 2B [Source:UniProtKB/Swiss-Prot;Acc:O80678]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.