Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G20880.1 | KRH03510 | AT5G61380.1 | 21798944 |
| AT1G20880.1 | KRH54582 | AT5G61380.1 | 21798944 |
| AT1G20880.1 | KRH56889 | AT5G61380.1 | 21798944 |
| AT1G20880.1 | KRH63298 | AT5G61380.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH51553 | Soybean | nucleus, plastid | 96.85 | 96.85 |
| VIT_18s0122g00660.t01 | Wine grape | nucleus, plastid | 79.72 | 80.0 |
| KRH75298 | Soybean | cytosol, nucleus | 24.83 | 71.72 |
| CDY31859 | Canola | nucleus | 59.79 | 70.95 |
| CDY01349 | Canola | nucleus | 59.09 | 70.12 |
| Bra025852.1-P | Field mustard | nucleus | 63.99 | 70.11 |
| CDX88283 | Canola | nucleus | 68.18 | 69.64 |
| CDY31508 | Canola | nucleus | 60.84 | 69.6 |
| CDX96615 | Canola | nucleus | 61.19 | 69.44 |
| Bra012254.1-P | Field mustard | nucleus | 58.39 | 69.29 |
| AT1G76460.1 | Thale cress | nucleus | 68.88 | 69.12 |
| Bra016445.1-P | Field mustard | nucleus | 62.24 | 68.99 |
| CDY29496 | Canola | nucleus | 62.94 | 68.97 |
| CDY33653 | Canola | nucleus | 60.84 | 68.77 |
| AT1G20880.1 | Thale cress | nucleus | 63.29 | 66.06 |
| KRH13261 | Soybean | cytosol | 28.32 | 65.32 |
| CDX87594 | Canola | nucleus | 67.83 | 60.62 |
| PGSC0003DMT400035478 | Potato | nucleus, plastid | 53.85 | 54.61 |
| Solyc02g082270.2.1 | Tomato | nucleus | 53.5 | 54.26 |
| Bra015741.1-P | Field mustard | nucleus, plastid, vacuole | 55.59 | 50.96 |
| KRH16743 | Soybean | nucleus | 43.71 | 45.62 |
| KRH23771 | Soybean | nucleus | 43.01 | 45.22 |
| KRH40033 | Soybean | nucleus | 42.31 | 44.49 |
| KRH18921 | Soybean | nucleus | 42.66 | 44.2 |
| KRH62942 | Soybean | mitochondrion | 31.12 | 43.63 |
| KRH62327 | Soybean | nucleus | 40.91 | 40.77 |
| KRH47819 | Soybean | nucleus | 41.96 | 40.54 |
| KRH53044 | Soybean | nucleus | 40.21 | 40.07 |
| KRH64318 | Soybean | nucleus | 35.66 | 39.69 |
| KRH06384 | Soybean | nucleus | 41.61 | 39.53 |
| KRH53608 | Soybean | nucleus | 33.92 | 39.43 |
| KRH47808 | Soybean | nucleus | 36.36 | 36.36 |
| KRH06373 | Soybean | nucleus | 34.97 | 36.1 |
| KRH47731 | Soybean | nucleus | 31.47 | 33.71 |
| KRH06306 | Soybean | nucleus | 31.12 | 33.09 |
| KRH07772 | Soybean | cytosol | 10.49 | 30.61 |
| KRH67043 | Soybean | nucleus | 21.68 | 18.24 |
| KRH71299 | Soybean | nucleus | 24.48 | 18.23 |
| KRG95365 | Soybean | nucleus | 21.33 | 18.15 |
| KRH50169 | Soybean | nucleus | 24.13 | 17.97 |
| KRH56541 | Soybean | nucleus | 11.89 | 17.0 |
| KRH17717 | Soybean | nucleus | 19.58 | 15.91 |
| KRH55109 | Soybean | nucleus | 24.13 | 15.54 |
| KRH26210 | Soybean | nucleus | 23.43 | 15.33 |
| KRH07154 | Soybean | nucleus | 19.93 | 15.32 |
| KRH23293 | Soybean | nucleus | 18.88 | 15.3 |
| KRG94084 | Soybean | nucleus | 19.93 | 15.24 |
| KRH34534 | Soybean | nucleus | 24.13 | 14.65 |
| KRG92276 | Soybean | endoplasmic reticulum | 24.13 | 14.5 |
| KRG93213 | Soybean | nucleus | 18.88 | 14.32 |
| KRG98573 | Soybean | nucleus | 23.43 | 13.99 |
| KRH46297 | Soybean | nucleus | 23.08 | 13.78 |
| KRH52137 | Soybean | nucleus | 18.18 | 13.76 |
| KRH73860 | Soybean | nucleus | 22.38 | 13.42 |
| KRH14284 | Soybean | nucleus | 22.03 | 13.18 |
| KRH61448 | Soybean | nucleus | 17.48 | 13.02 |
| KRH77004 | Soybean | nucleus | 16.43 | 12.98 |
| KRH28467 | Soybean | cytosol | 16.43 | 12.88 |
| KRH74025 | Soybean | nucleus | 21.33 | 12.84 |
| KRH66628 | Soybean | nucleus | 21.68 | 12.76 |
| KRH14098 | Soybean | nucleus | 21.33 | 12.73 |
| KRG94993 | Soybean | nucleus | 20.98 | 12.53 |
| KRH73477 | Soybean | nucleus | 21.33 | 12.3 |
| KRH14673 | Soybean | nucleus | 20.98 | 12.15 |
| KRH05541 | Soybean | cytosol, endoplasmic reticulum | 13.64 | 12.04 |
Protein Annotations
| EntrezGene:100782606 | Gene3D:3.30.70.330 | MapMan:35.1 | EMBL:ACUP02002142 | EnsemblPlantsGene:GLYMA_04G014300 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | UniProt:I1JSR0 | InterPro:IPR000504 | InterPro:IPR012677 |
| EnsemblPlants:KRH60871 | ProteinID:KRH60871 | ProteinID:KRH60871.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR44828 | PANTHER:PTHR44828:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI000233A388 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr4:+:1101709..1106543
Molecular Weight (calculated)
30638.9 Da
IEP (calculated)
8.751
GRAVY (calculated)
-0.363
Length
286 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYQAMQGPS SGSSSSSGFQ LLNSPFGDTT YTKVFVGGLA WETQSETMRR YFDQFGEILE AVVITDKNTG RSKGYGFVTF RDPEAARRAC ADPSPVIDGR
101: RANCNLASLG RPRPPLPYGR IRPASPYVGS LQPARGAYVG GFGYQQPVSY SYQQGLVYPP YGYTSYGPEY IYPQSLYNPY MGQQYLQIYG VPGAVNTTTI
201: YPYGQVGQAI TSGHGYSAMQ GYTVPGHQIV PYGGSNVNAI TTSPMPAIQA SYPSGIAAPV PGQPQFIVPA PSPQFMQGSG PDQTAG
101: RANCNLASLG RPRPPLPYGR IRPASPYVGS LQPARGAYVG GFGYQQPVSY SYQQGLVYPP YGYTSYGPEY IYPQSLYNPY MGQQYLQIYG VPGAVNTTTI
201: YPYGQVGQAI TSGHGYSAMQ GYTVPGHQIV PYGGSNVNAI TTSPMPAIQA SYPSGIAAPV PGQPQFIVPA PSPQFMQGSG PDQTAG
001: MAYQPVPGSG FHYLNSPFGD TTFTKVFVGG LAWETQSETL RQHFEQYGEI LEAVVIADKN TGRSKGYGFV TFRDPEAARR ACADPTPIID GRRANCNLAS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I2E4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.