CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92276
KRG96615
KRG99861
KRH07772
KRH13261
KRH23771
KRH33663
KRH34534
KRH40033
KRH41723
KRH46807
KRH53629
KRH60424
KRH62942
KRH64297
KRH68348
KRH69138
KRH75298

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61380.1	KRH13261	AT1G33470.1	21798944
AT5G61380.1	KRH23771	AT1G33470.1	21798944
AT5G61380.1	KRH40033	AT1G33470.1	21798944
AT5G61380.1	KRH62942	AT1G33470.1	21798944
AT5G61380.1	KRH75298	AT1G33470.1	21798944
AT5G61380.1	KRH41723	AT1G68050.1	14654842
AT5G61380.1	KRH60424	AT1G68050.1	14654842
AT5G61380.1	KRG92276	AT2G33410.1	21798944
AT5G61380.1	KRH07772	AT2G33410.1	21798944
AT5G61380.1	KRH34534	AT2G33410.1	21798944
AT5G61380.1	KRG96615	AT2G46970.1	11828029
AT5G61380.1	KRH33663	AT2G46970.1	11828029
AT5G61380.1	KRH68348	AT2G46970.1	11828029
AT5G61380.1	KRH69138	AT2G46970.1	11828029
AT5G61380.1	KRG99861	AT3G24650.1	10743655
AT5G61380.1	KRH46807	AT3G24650.1	10743655
AT5G61380.1	KRH53629	AT5G24470.1	20407420
AT5G61380.1	KRH64297	AT5G24470.1	20407420

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54582	Soybean	nucleus	94.46	94.8
KRH56889	Soybean	nucleus	76.96	74.96
KRH03510	Soybean	nucleus	75.54	73.06
VIT_17s0000g06570.t01	Wine grape	nucleus	65.89	66.97
PGSC0003DMT400050252	Potato	nucleus	60.89	61.89
Solyc03g115770.2.1	Tomato	nucleus	60.71	61.59
Solyc06g069690.2.1	Tomato	nucleus	53.21	59.36
PGSC0003DMT400083086	Potato	nucleus	58.04	59.2
Bra035933.1-P	Field mustard	nucleus	52.32	57.56
CDX87210	Canola	nucleus	51.07	57.09
CDY02151	Canola	nucleus	52.32	53.56
CDY64140	Canola	nucleus	53.75	52.53
Bra012964.1-P	Field mustard	nucleus	53.75	52.26
AT5G61380.1	Thale cress	nucleus	55.71	50.49
HORVU6Hr1G057630.1	Barley	nucleus	43.75	46.93
TraesCS6B01G253900.1	Wheat	nucleus	43.21	46.9
EES05438	Sorghum	nucleus	43.75	46.76
GSMUA_Achr9P19550_001	Banana	nucleus	43.75	46.49
GSMUA_Achr2P04570_001	Banana	nucleus	45.54	46.45
Os02t0618200-01	Rice	nucleus	42.86	46.33
GSMUA_Achr10P...	Banana	nucleus	44.82	46.31
Zm00001d017241_P002	Maize	nucleus	42.32	45.84
Zm00001d051114_P001	Maize	nucleus	43.39	44.51
TraesCS6A01G227900.2	Wheat	endoplasmic reticulum, plasma membrane, plastid	43.04	42.88
TraesCS6D01G207100.2	Wheat	endoplasmic reticulum, nucleus, plastid	42.86	42.4
Zm00001d003811_P001	Maize	cytosol	23.75	41.3
Zm00001d043140_P001	Maize	cytosol	21.96	40.46
Zm00001d018818_P001	Maize	cytosol	21.96	40.46
Zm00001d044406_P001	Maize	cytosol	21.43	39.47
Zm00001d005366_P001	Maize	cytosol	25.71	26.57
KRH64297	Soybean	nucleus	23.75	19.25
KRH53629	Soybean	nucleus	23.75	19.0
KRH47791	Soybean	nucleus	23.75	18.42
KRG97248	Soybean	nucleus	22.5	18.39
KRH68964	Soybean	nucleus	22.5	18.21
KRH06354	Soybean	nucleus	22.5	17.85
KRH32378	Soybean	nucleus	23.75	17.66
KRH19783	Soybean	nucleus	23.39	17.35
KRH24970	Soybean	cytosol, endoplasmic reticulum, nucleus	16.96	15.18
KRG88711	Soybean	nucleus	16.96	12.42

Protein Annotations

EntrezGene:100799728	MapMan:27.1.3	Gene3D:3.40.50.2300	EMBL:ACUP02002663	InterPro:CCT_domain	InterPro:CheY-like_superfamily
EnsemblPlantsGene:GLYMA_04G166300	GO:GO:0000160	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	UniProt:I1JWS5	InterPro:IPR001789	InterPro:IPR010402	EnsemblPlants:KRH63298	ProteinID:KRH63298
ProteinID:KRH63298.1	PFAM:PF00072	PFAM:PF06203	PFscan:PS50110	PFscan:PS51017	PANTHER:PTHR43874
PANTHER:PTHR43874:SF35	SMART:SM00448	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	UniParc:UPI000233A50F	SEG:seg

Description

hypothetical protein

Coordinates

chr4:-:41752400..41757209

Molecular Weight (calculated)

62595.5 Da

IEP (calculated)

5.849

GRAVY (calculated)

-0.677

Length

560 amino acids

Sequence
(BLAST)

001: MESGDEINLN IESGNNGKSG GDGFVDRSKV RILLCDNDSK SSQEVFTLLL RCSYQVTSVK SARQVIDALN AEGQHIDIIL AELDLPMKKG MKMLKYIAQD
101: KEFRRIPVIM MSAQDEVSVV VKCLRLGAAD YLVKPLRTNE LLNLWTHMWR RRRMLGLVEK NILNYDFDLV VSDPSDANTN STTLFSDDTD DKSKRSTNPE
201: VGISVQQEQE STIAIAAAVE EPPDAHASEC GPDVDGVNDH QTAHFSSGPK KSELRIGESS AFFTYVKASI LKSNLEGVVN VDKNGATHVR MEVMHQTCAQ
301: QGVNDLQIRE NGEAYESQSQ DDLPSSTSIP DSLSIERSCT PPASMEVSQQ KHYREENLHQ GVMHPRNGTH CSELEVSGMA SQQVYPYYIS GVVNHVMMPS
401: SAQMYHQKNI QDLQNHPSSA MISQYSHLPQ GGPHGTGMTS FPYYPMSICL QPGQIPNPHS WQSFGNSSSS EAKLSKVDRR EAALMKFRQK RKERCFDKKI
501: RYVNRKRLAE RRPRVRGQFV RKLKGANADL NGQPASIDYD EDDEEDEDDQ GARDSSPEDA

Best Arabidopsis Sequence Match ( AT5G61380.1 )
(BLAST)

001: MDLNGECKGG DGFIDRSRVR ILLCDNDSTS LGEVFTLLSE CSYQVTAVKS ARQVIDALNA EGPDIDIILA EIDLPMAKGM KMLRYITRDK DLRRIPVIMM
101: SRQDEVPVVV KCLKLGAADY LVKPLRTNEL LNLWTHMWRR RRMLGLAEKN MLSYDFDLVG SDQSDPNTNS TNLFSDDTDD RSLRSTNPQR GNLSHQENEW
201: SVATAPVHAR DGGLGADGTA TSSLAVTAIE PPLDHLAGSH HEPMKRNSNP AQFSSAPKKS RLKIGESSAF FTYVKSTVLR TNGQDPPLVD GNGSLHLHRG
301: LAEKFQVVAS EGINNTKQAR RATPKSTVLR TNGQDPPLVN GNGSHHLHRG AAEKFQVVAS EGINNTKQAH RSRGTEQYHS QGETLQNGAS YPHSLERSRT
401: LPTSMESHGR NYQEGNMNIP QVAMNRSKDS SQVDGSGFSA PNAYPYYMHG VMNQVMMQSA AMMPQYGHQI PHCQPNHPNG MTGYPYYHHP MNTSLQHSQM
501: SLQNGQMSMV HHSWSPAGNP PSNEVRVNKL DRREEALLKF RRKRNQRCFD KKIRYVNRKR LAERRPRVKG QFVRKMNGVN VDLNGQPDSA DYDDEEEEEE
601: EEEEENRDSS PQDDALGT

Arabidopsis Description

APRR1Two-component response regulator-like APRR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.