Factsheet for Solyc03g115770.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g005300.2.1
Solyc01g102300.2.1
Solyc03g005680.2.1
Solyc03g081240.2.1
Solyc06g083590.2.1
Solyc06g083600.1.1
Solyc09g090520.2.1
Solyc11g044470.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61380.1	Solyc11g044470.1.1	AT1G33470.1	21798944
AT5G61380.1	Solyc01g005300.2.1	AT1G68050.1	14654842
AT5G61380.1	Solyc03g005680.2.1	AT2G33410.1	21798944
AT5G61380.1	Solyc09g090520.2.1	AT2G33410.1	21798944
AT5G61380.1	Solyc01g102300.2.1	AT2G46970.1	11828029
AT5G61380.1	Solyc06g083590.2.1	AT3G24650.1	10743655
AT5G61380.1	Solyc06g083600.1.1	AT3G24650.1	10743655
AT5G61380.1	Solyc03g081240.2.1	AT5G24470.1	20407420

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400050252	Potato	nucleus	96.38	96.55
Solyc06g069690.2.1	Tomato	nucleus	59.42	65.34
VIT_17s0000g06570.t01	Wine grape	nucleus	65.04	65.15
KRH54582	Soybean	nucleus	61.96	61.29
KRH63298	Soybean	nucleus	61.59	60.71
KRH56889	Soybean	nucleus	61.59	59.13
KRH03510	Soybean	nucleus	60.51	57.69
CDX87210	Canola	nucleus	50.72	55.89
Bra035933.1-P	Field mustard	nucleus	50.54	54.81
CDY02151	Canola	nucleus	52.36	52.83
Bra012964.1-P	Field mustard	nucleus	53.08	50.87
CDY64140	Canola	nucleus	52.36	50.44
AT5G61380.1	Thale cress	nucleus	53.99	48.22
GSMUA_Achr10P...	Banana	nucleus	44.75	45.57
Os02t0618200-01	Rice	nucleus	41.85	44.59
GSMUA_Achr9P19550_001	Banana	nucleus	42.57	44.59
GSMUA_Achr2P04570_001	Banana	nucleus	44.2	44.44
TraesCS6B01G253900.1	Wheat	nucleus	40.94	43.8
EES05438	Sorghum	nucleus	41.12	43.32
HORVU6Hr1G057630.1	Barley	nucleus	40.76	43.1
Zm00001d017241_P002	Maize	nucleus	40.22	42.94
Zm00001d051114_P001	Maize	nucleus	40.58	41.03
TraesCS6A01G227900.2	Wheat	endoplasmic reticulum, plasma membrane, plastid	41.12	40.39
TraesCS6D01G207100.2	Wheat	endoplasmic reticulum, nucleus, plastid	41.12	40.11
Zm00001d003811_P001	Maize	cytosol	20.65	35.4
Zm00001d018818_P001	Maize	cytosol	18.66	33.88
Zm00001d043140_P001	Maize	cytosol	18.66	33.88
Zm00001d044406_P001	Maize	cytosol	18.12	32.89
Zm00001d005366_P001	Maize	cytosol	22.64	23.06
Solyc03g081270.1.1	Tomato	plastid	9.6	20.87
Solyc03g081240.2.1	Tomato	nucleus	22.83	18.53
Solyc10g005030.2.1	Tomato	nucleus	21.01	17.98
Solyc04g049670.2.1	Tomato	nucleus	20.29	17.69
Solyc10g086000.1.1	Tomato	nucleus	19.57	14.79

Protein Annotations

MapMan:27.1.3	Gene3D:3.40.50.2300	InterPro:CCT_domain	InterPro:CheY-like_superfamily	GO:GO:0000160	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	InterPro:IPR001789	InterPro:IPR010402
UniProt:K4BL79	PFAM:PF00072	PFAM:PF06203	PFscan:PS50110	PFscan:PS51017	PANTHER:PTHR43874
PANTHER:PTHR43874:SF1	SMART:SM00448	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	EnsemblPlantsGene:Solyc03g115770.2	EnsemblPlants:Solyc03g115770.2.1
UniParc:UPI0002768B43	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:-:65377742..65383583

Molecular Weight (calculated)

62725.5 Da

IEP (calculated)

6.675

GRAVY (calculated)

-0.681

Length

552 amino acids

Sequence
(BLAST)

001: MEKNKIIKSG DGFIDRSKVR ILLCDKDLSS SQEVLTLLCK CSYQVTLVRS PRQVIDALNA EGPDIDIILS EVDLPITKGY KMLKYIMKDK ELRRIPVIMM
101: SSQDEVSIVV KCLKFGAADY LVKPLRTNEL LNLWTHMWRR RQMLGLAEKN ILSYDFDLII SDPSDHNTNS TTLFSDDTDD KSRKSVNLEV CPSIQFEDEI
201: NAATTTTAVE TLVVVPFECQ YNVPGTNNRQ TGRISSFPKK SELKIGESSA FFTYVKSGMP KSNDQGMIST NENVAHQPRM EGKTNAAVGH LEIETQMQVN
301: GDAVENHSHV DDYPSSNSLP DSYSMERSST PPLSLELPQQ RNSKMEEFSQ GYMSLHNKAQ RDTVNFHVQN AYPYFMPGAM NQVMMPPSAQ MYQKNLQDFH
401: NHANPAASPQ YNHMPPCPPH MHGMSSFPYY PMGLCLRPGE MPTPHQWPTT GNSPSAEGKW SKVDRRKAAL LKFRQKRKER CFDKKIRYVN RKKLAERRPR
501: VRGQFVRKVN GVNVDLNGHP ASADYDVDEE EEDEEEQTGN FDSPEDDPSM CL

Best Arabidopsis Sequence Match ( AT5G61380.1 )
(BLAST)

001: MDLNGECKGG DGFIDRSRVR ILLCDNDSTS LGEVFTLLSE CSYQVTAVKS ARQVIDALNA EGPDIDIILA EIDLPMAKGM KMLRYITRDK DLRRIPVIMM
101: SRQDEVPVVV KCLKLGAADY LVKPLRTNEL LNLWTHMWRR RRMLGLAEKN MLSYDFDLVG SDQSDPNTNS TNLFSDDTDD RSLRSTNPQR GNLSHQENEW
201: SVATAPVHAR DGGLGADGTA TSSLAVTAIE PPLDHLAGSH HEPMKRNSNP AQFSSAPKKS RLKIGESSAF FTYVKSTVLR TNGQDPPLVD GNGSLHLHRG
301: LAEKFQVVAS EGINNTKQAR RATPKSTVLR TNGQDPPLVN GNGSHHLHRG AAEKFQVVAS EGINNTKQAH RSRGTEQYHS QGETLQNGAS YPHSLERSRT
401: LPTSMESHGR NYQEGNMNIP QVAMNRSKDS SQVDGSGFSA PNAYPYYMHG VMNQVMMQSA AMMPQYGHQI PHCQPNHPNG MTGYPYYHHP MNTSLQHSQM
501: SLQNGQMSMV HHSWSPAGNP PSNEVRVNKL DRREEALLKF RRKRNQRCFD KKIRYVNRKR LAERRPRVKG QFVRKMNGVN VDLNGQPDSA DYDDEEEEEE
601: EEEEENRDSS PQDDALGT

Arabidopsis Description

APRR1Two-component response regulator-like APRR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.