Factsheet for Solyc06g083600.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g097300.2.1
Solyc03g025570.2.1
Solyc03g115770.2.1
Solyc05g051790.2.1
Solyc05g053510.1.1
Solyc06g069690.2.1
Solyc08g067290.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24650.1	Solyc01g097300.2.1	AT1G08780.1	10743655
AT3G24650.1	Solyc03g025570.2.1	AT3G22320.1	10743655
AT3G24650.1	Solyc05g051790.2.1	AT3G22320.1	10743655
AT3G24650.1	Solyc05g053510.1.1	AT3G22320.1	10743655
AT3G24650.1	Solyc08g067290.2.1	AT5G20910.1	10743655
AT3G24650.1	Solyc03g115770.2.1	AT5G61380.1	10743655
AT3G24650.1	Solyc06g069690.2.1	AT5G61380.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400051934	Potato	nucleus	95.16	95.16
Solyc06g083590.2.1	Tomato	nucleus	69.68	74.61
VIT_07s0005g05400.t01	Wine grape	nucleus	48.71	41.2
KRG99861	Soybean	nucleus	46.61	38.13
OQU89229	Sorghum	nucleus	24.52	37.81
CDY15121	Canola	nucleus	40.48	37.35
KRH46807	Soybean	nucleus	45.81	37.32
CDX93029	Canola	nucleus	41.94	36.21
Bra013248.1-P	Field mustard	nucleus	41.77	36.12
AT3G24650.1	Thale cress	nucleus	41.94	36.11
GSMUA_AchrUn_...	Banana	nucleus	34.68	31.71
TraesCS3D01G412800.1	Wheat	nucleus	34.03	30.49
Zm00001d042396_P003	Maize	nucleus	33.87	30.39
TraesCS3B01G452200.1	Wheat	nucleus	33.71	30.38
HORVU3Hr1G092690.2	Barley	nucleus	33.23	30.21
EES04085	Sorghum	nucleus	33.87	29.96
GSMUA_Achr7P23040_001	Banana	nucleus	35.32	29.88
TraesCS3A01G417300.1	Wheat	nucleus	33.23	29.77
Os01t0911700-02	Rice	nucleus	33.55	28.61
Solyc02g094460.1.1	Tomato	nucleus	9.68	21.9
Solyc10g006830.2.1	Tomato	cytosol, plastid	1.94	10.43
Solyc06g082520.2.1	Tomato	nucleus	10.97	8.05
Solyc10g075030.1.1	Tomato	nucleus	11.13	7.85
Solyc02g079020.2.1	Tomato	nucleus	11.29	6.71

Protein Annotations

MapMan:15.5.5.5	Gene3D:2.40.330.10	InterPro:B3_DNA-bd	ncoils:Coil	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300	UniProt:K4CAL5	PFAM:PF02362
PFscan:PS50863	PANTHER:PTHR31140	PANTHER:PTHR31140:SF1	SMART:SM01019	SUPFAM:SSF101936	EnsemblPlantsGene:Solyc06g083600.1
EnsemblPlants:Solyc06g083600.1.1	UniParc:UPI000276B5DD	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:+:48957406..48960350

Molecular Weight (calculated)

70496.7 Da

IEP (calculated)

5.320

GRAVY (calculated)

-0.824

Length

620 amino acids

Sequence
(BLAST)

001: MERELHGVDN ENENTNLVDI QMLQQQQQHD CTDFDPMDET DIWLNENFST DFTSLQDFPC MSSSSSTSFS PPTESDPSSG VVLKSDADEQ DFDKKIDTIG
101: DQECLNVMDN VGYIDVNEFL DPMISFLHNE NPQEQQQQQQ QQQLLPQEDD DQGFSFFQGD SELALMFFEW LKQNRDYICA EDMRSIKLKR STIESASKRL
201: GSTKEGKKQL LRLILDWVEQ HRLQKKQMRE AEAINQQALQ NSVPYNFDPN ACFYPPQWIP NAPFPDSSTP IMTGPIQGYT SDPYSNGGLF PPPYSQTMSG
301: GATSPASAEY QPMDTSQSWS PSQFTMATTS QYNPFPENDS TNNVAMPDQS LFGAQYDPYQ LFDGNGEIVP RLGSCATKEA RKNRMARQRR LRPHHYRHQA
401: RNPRQITNEQ SVMMAGEINN CVMTQANNPG NWVCWPSPPM AMVSQSLPPE RPAMQSQNQQ KQVSTSADKK QAFKSEKNLK FLLQKVLKQS DVNNLGRIVL
501: PKKEAERHLP HLETRDGISI AMEDIGTSRV WNMKYRFWPN NKSRMYLLEN TGDFVKANGL QEGDFIVIYA DMKCGKYLIR GVKVRQNGPK SEGKKQMKKN
601: PRKLSSAAAI SSSPVAQAVR

Best Arabidopsis Sequence Match ( AT3G24650.1 )
(BLAST)

001: MKSLHVAANA GDLAEDCGIL GGDADDTVLM DGIDEVGREI WLDDHGGDNN HVHGHQDDDL IVHHDPSIFY GDLPTLPDFP CMSSSSSSST SPAPVNAIVS
101: SASSSSAASS STSSAASWAI LRSDGEDPTP NQNQYASGNC DDSSGALQST ASMEIPLDSS QGFGCGEGGG DCIDMMETFG YMDLLDSNEF FDTSAIFSQD
201: DDTQNPNLMD QTLERQEDQV VVPMMENNSG GDMQMMNSSL EQDDDLAAVF LEWLKNNKET VSAEDLRKVK IKKATIESAA RRLGGGKEAM KQLLKLILEW
301: VQTNHLQRRR TTTTTTNLSY QQSFQQDPFQ NPNPNNNNLI PPSDQTCFSP STWVPPPPQQ QAFVSDPGFG YMPAPNYPPQ PEFLPLLESP PSWPPPPQSG
401: PMPHQQFPMP PTSQYNQFGD PTGFNGYNMN PYQYPYVPAG QMRDQRLLRL CSSATKEARK KRMARQRRFL SHHHRHNNNN NNNNNNQQNQ TQIGETCAAV
501: APQLNPVATT ATGGTWMYWP NVPAVPPQLP PVMETQLPTM DRAGSASAMP RQQVVPDRRQ GWKPEKNLRF LLQKVLKQSD VGNLGRIVLP KKEAETHLPE
601: LEARDGISLA MEDIGTSRVW NMRYRFWPNN KSRMYLLENT GDFVKTNGLQ EGDFIVIYSD VKCGKYLIRG VKVRQPSGQK PEAPPSSAAT KRQNKSQRNI
701: NNNSPSANVV VASPTSQTVK

Arabidopsis Description

ABI3B3 domain-containing transcription factor ABI3 [Source:UniProtKB/Swiss-Prot;Acc:Q01593]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.