Factsheet for Solyc05g053510.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g083590.2.1
Solyc06g083600.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22320.1	Solyc06g083590.2.1	AT3G24650.1	10743655
AT3G22320.1	Solyc06g083600.1.1	AT3G24650.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069997	Potato	nucleus	88.89	88.89
Solyc05g051790.2.1	Tomato	nucleus	65.22	71.81
Solyc03g025570.2.1	Tomato	cytosol	39.13	69.23
VIT_11s0016g03530.t01	Wine grape	nucleus	65.22	65.53
Bra001864.1-P	Field mustard	nucleus	64.25	64.56
CDX92939	Canola	nucleus	64.25	64.56
CDY35542	Canola	nucleus	64.25	64.56
CDY24303	Canola	nucleus	64.25	64.56
AT3G22320.1	Thale cress	nucleus	63.77	64.39
KRH48354	Soybean	nucleus	63.77	64.08
KRH39324	Soybean	nucleus	63.28	63.59
GSMUA_AchrUn_...	Banana	nucleus	63.28	63.28
Bra031350.1-P	Field mustard	nucleus	61.35	61.65
CDY10635	Canola	nucleus	60.87	61.16
GSMUA_Achr2P00920_001	Banana	nucleus	59.9	60.78
CDY37407	Canola	nucleus	60.39	60.68
KXG33574	Sorghum	nucleus	59.42	58.57
Os01t0805800-01	Rice	nucleus	58.94	58.1
Zm00001d012557_P001	Maize	extracellular	58.45	57.62
KXG26596	Sorghum	nucleus	57.0	57.28
TraesCS3D01G326800.2	Wheat	nucleus	57.97	57.14
TraesCS3B01G363400.1	Wheat	nucleus	57.97	57.14
HORVU3Hr1G078930.1	Barley	nucleus	57.97	57.14
TraesCS3A01G333200.2	Wheat	nucleus	57.97	57.14
TraesCS2B01G364600.1	Wheat	nucleus, plastid	56.04	55.5
TraesCS2D01G344900.1	Wheat	nucleus	56.04	55.5
Zm00001d003242_P001	Maize	mitochondrion	55.07	55.34
TraesCS2A01G346200.1	Wheat	nucleus	55.56	55.02
TraesCS2A01G346300.1	Wheat	nucleus	54.11	54.63
TraesCS2D01G345000.2	Wheat	nucleus	53.62	54.15
TraesCS2B01G364700.1	Wheat	nucleus, plastid	53.14	53.66
Bra006521.1-P	Field mustard	nucleus	50.72	52.76
CDX70895	Canola	nucleus	51.69	51.44
CDX88871	Canola	nucleus	52.17	50.94
TraesCS2A01G346100.2	Wheat	nucleus	46.86	47.55
Os04t0487300-01	Rice	nucleus	38.16	47.31
HORVU6Hr1G071230.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	22.71	47.0
HORVU2Hr1G084270.1	Barley	nucleus	45.89	46.57
TraesCS2D01G344800.1	Wheat	mitochondrion, nucleus	45.41	46.08
TraesCS2B01G364500.1	Wheat	nucleus	44.44	45.1
HORVU1Hr1G048500.1	Barley	endoplasmic reticulum	10.63	44.9
HORVU1Hr1G052270.3	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	23.67	43.75
HORVU7Hr1G020400.1	Barley	cytosol, mitochondrion, nucleus, plastid	23.67	43.75
HORVU4Hr1G028860.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	23.19	42.86
AT3G16680.1	Thale cress	golgi	17.87	42.53
HORVU2Hr1G026650.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	22.71	41.96
HORVU2Hr1G084300.6	Barley	nucleus, plastid	53.62	40.22
HORVU6Hr1G011700.1	Barley	endoplasmic reticulum, nucleus	28.99	32.97
Solyc04g040170.2.1	Tomato	nucleus	33.82	30.84
Solyc01g098320.2.1	Tomato	nucleus	32.85	29.96

Protein Annotations

MapMan:15.1.6.3	Gene3D:3.40.1340.10	Gene3D:3.90.940.20	InterPro:DNA_RNA_pol_RPB5_euk/virus	GO:GO:0001054	GO:GO:0001055
GO:GO:0001056	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005665	GO:GO:0005666	GO:GO:0005730	GO:GO:0005736	GO:GO:0006139	GO:GO:0006351
GO:GO:0006360	GO:GO:0006366	GO:GO:0006383	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	InterPro:IPR035913	InterPro:IPR036710	UniProt:K4C231	HAMAP:MF_00025
PFAM:PD005155	PFAM:PF01191	PFAM:PF03871	PIRSF:PIRSF000747	PANTHER:PTHR10535	InterPro:RNA_pol_Rpb5_N
InterPro:RNA_pol_Rpb5_N_sf	InterPro:RNA_pol_subH/Rpb5_C	InterPro:RPB5-like	InterPro:RpoH/RPB5	SUPFAM:SSF53036	SUPFAM:SSF55287
EnsemblPlantsGene:Solyc05g053510.1	EnsemblPlants:Solyc05g053510.1.1	UniParc:UPI0002766311	:	:	:

Description

No Description!

Coordinates

chr5:-:63581942..63583828

Molecular Weight (calculated)

24306.6 Da

IEP (calculated)

9.483

GRAVY (calculated)

-0.501

Length

207 amino acids

Sequence
(BLAST)

001: MSTLSEHEVT ILYKVRKTVM EMLNDRGYVV EEFEIKMSKQ EFLHKYGVNM KRQDLEILKA KRNDDESKIY VFFPEGAKVG VKEMRPYAER LRQEDVSQAI
101: FVVKQKLTPK SDQFISEVST MLNLEVFQEA ELIVNVKNHA IVPEHQPLTK EEKKSLLEQY TVKESQLPRI QITDPIARYY GLKRGQVVKI IRPSETAGRY
201: VTYRYVV

Best Arabidopsis Sequence Match ( AT3G22320.1 )
(BLAST)

001: MLTEEELKRL YRIQKTLMQM LRDRGYFIAD SELTMTKQQF IRKHGDNMKR EDLVTLKAKR NDNSDQLYIF FPDEAKVGVK TMKMYTNRMK SENVFRAILV
101: VQQNLTPFAR TCISEISSKF HLEVFQEAEM LVNIKEHVLV PEHQVLTTEE KKTLLERYTV KETQLPRIQV TDPIARYFGL KRGQVVKIIR PSETAGRYVT
201: YRYVV

Arabidopsis Description

NRPB5ADNA-directed RNA polymerases II and IV subunit 5A [Source:UniProtKB/Swiss-Prot;Acc:O81098]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.