Factsheet for GSMUA_AchrUn_randomP09620_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 3
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr7P23040_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22320.1	GSMUA_Achr7P23040_001	AT3G24650.1	10743655
AT3G22320.1	GSMUA_AchrUn_...	AT3G24650.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g025570.2.1	Tomato	cytosol	43.96	77.78
GSMUA_Achr2P00920_001	Banana	nucleus	76.33	77.45
VIT_11s0016g03530.t01	Wine grape	nucleus	76.81	77.18
Solyc05g051790.2.1	Tomato	nucleus	68.12	75.0
AT3G22320.1	Thale cress	nucleus	72.95	73.66
Bra001864.1-P	Field mustard	nucleus	72.95	73.3
PGSC0003DMT400051454	Potato	nucleus	72.95	73.3
KRH48354	Soybean	nucleus	72.95	73.3
CDX92939	Canola	nucleus	72.95	73.3
CDY35542	Canola	nucleus	72.95	73.3
CDY24303	Canola	nucleus	72.95	73.3
PGSC0003DMT400077392	Potato	nucleus	72.46	72.82
KRH39324	Soybean	nucleus	72.46	72.82
Zm00001d003242_P001	Maize	mitochondrion	71.98	72.33
Bra031350.1-P	Field mustard	nucleus	70.53	70.87
CDY10635	Canola	nucleus	70.05	70.39
CDY37407	Canola	nucleus	69.57	69.9
KXG26596	Sorghum	nucleus	68.12	68.45
TraesCS2A01G346300.1	Wheat	nucleus	67.15	67.8
Os04t0487300-01	Rice	nucleus	54.59	67.66
TraesCS2D01G345000.2	Wheat	nucleus	66.67	67.32
TraesCS2B01G364600.1	Wheat	nucleus, plastid	67.63	66.99
TraesCS2B01G364700.1	Wheat	nucleus, plastid	66.18	66.83
TraesCS2A01G346200.1	Wheat	nucleus	67.15	66.51
TraesCS2D01G344900.1	Wheat	nucleus	67.15	66.51
Solyc05g053510.1.1	Tomato	nucleus	63.28	63.28
PGSC0003DMT400069997	Potato	nucleus	61.84	61.84
HORVU1Hr1G048500.1	Barley	endoplasmic reticulum	13.53	57.14
TraesCS2A01G346100.2	Wheat	nucleus	56.04	56.86
TraesCS2B01G364500.1	Wheat	nucleus	55.56	56.37
HORVU2Hr1G084270.1	Barley	nucleus	55.56	56.37
TraesCS2D01G344800.1	Wheat	mitochondrion, nucleus	55.56	56.37
Bra006521.1-P	Field mustard	nucleus	54.11	56.28
CDX88871	Canola	nucleus	55.56	54.25
HORVU6Hr1G071230.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	26.09	54.0
CDX70895	Canola	nucleus	54.11	53.85
AT3G16680.1	Thale cress	golgi	22.22	52.87
HORVU2Hr1G084300.6	Barley	nucleus, plastid	66.67	50.0
HORVU7Hr1G020400.1	Barley	cytosol, mitochondrion, nucleus, plastid	26.57	49.11
HORVU1Hr1G052270.3	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	26.09	48.21
HORVU4Hr1G028860.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	25.6	47.32
HORVU2Hr1G026650.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	25.12	46.43
GSMUA_Achr9P19340_001	Banana	nucleus	22.22	46.0
Bra006791.1-P	Field mustard	nucleus	44.93	44.29
CDY11839	Canola	nucleus	44.93	44.29
CDX88650	Canola	nucleus	44.93	44.29
AT5G57980.1	Thale cress	nucleus	44.93	44.29
HORVU6Hr1G011700.1	Barley	endoplasmic reticulum, nucleus	34.3	39.01

Protein Annotations

MapMan:15.1.6.3	Gene3D:3.40.1340.10	Gene3D:3.90.940.20	InterPro:DNA_RNA_pol_RPB5_euk/virus	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	EnsemblPlantsGene:GSMUA_AchrUn_randomG09620_001	EnsemblPlants:GSMUA_AchrUn_randomP09620_001	EnsemblPlants:GSMUA_AchrUn_randomT09620_001
InterPro:IPR035913	InterPro:IPR036710	UniProt:M0U7S2	HAMAP:MF_00025	PFAM:PD005155	PFAM:PF01191
PFAM:PF03871	PIRSF:PIRSF000747	ScanProsite:PS01110	PANTHER:PTHR10535	InterPro:RNA_pol_Rpb5_N	InterPro:RNA_pol_Rpb5_N_sf
InterPro:RNA_pol_subH/Rpb5_C	InterPro:RNA_pol_subH/Rpb5_CS	InterPro:RPB5-like	InterPro:RpoH/RPB5	SUPFAM:SSF53036	SUPFAM:SSF55287
UniParc:UPI000296D46B	SEG:seg	:	:	:	:

Description

DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG09620_001]

Coordinates

chrchrUn_random:-:45107836..45119798

Molecular Weight (calculated)

24410.7 Da

IEP (calculated)

10.069

GRAVY (calculated)

-0.536

Length

207 amino acids

Sequence
(BLAST)

001: MATSEGEVSR LFRIRRTVMQ MLRDRGYLVV AAKDIDINMR QFLEKYGENP KRDELVINKQ KKNDNNDQIY VFFPTEAKVG VKQIKQYVER MKQENVFRAI
101: LVVQQNLTPF ARSSLQEASQ KYHLEVFQEA ELLVNIKDHV LVPEHQVLTS EEKKTLLERY TLKETQLPRI QVTDPIARYY GLKRGQVVKI IRPSETAGRY
201: VTYRYVV

Best Arabidopsis Sequence Match ( AT3G22320.1 )
(BLAST)

001: MLTEEELKRL YRIQKTLMQM LRDRGYFIAD SELTMTKQQF IRKHGDNMKR EDLVTLKAKR NDNSDQLYIF FPDEAKVGVK TMKMYTNRMK SENVFRAILV
101: VQQNLTPFAR TCISEISSKF HLEVFQEAEM LVNIKEHVLV PEHQVLTTEE KKTLLERYTV KETQLPRIQV TDPIARYFGL KRGQVVKIIR PSETAGRYVT
201: YRYVV

Arabidopsis Description

NRPB5ADNA-directed RNA polymerases II and IV subunit 5A [Source:UniProtKB/Swiss-Prot;Acc:O81098]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.