Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plastid, cytosol, plasma membrane, golgi, nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- nucleus 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G092690.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G22320.1 | HORVU3Hr1G092690.2 | AT3G24650.1 | 10743655 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G048500.1 | Barley | endoplasmic reticulum | 46.0 | 93.88 |
| HORVU7Hr1G020400.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 96.0 | 85.71 |
| HORVU1Hr1G052270.3 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 92.0 | 82.14 |
| HORVU4Hr1G028860.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 91.0 | 81.25 |
| HORVU2Hr1G026650.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 91.0 | 81.25 |
| HORVU6Hr1G011700.1 | Barley | endoplasmic reticulum, nucleus | 69.0 | 37.91 |
| AT3G16680.1 | Thale cress | golgi | 32.0 | 36.78 |
| Solyc03g025570.2.1 | Tomato | cytosol | 42.0 | 35.9 |
| TraesCS2A01G346200.1 | Wheat | nucleus | 68.0 | 32.54 |
| TraesCS2D01G344900.1 | Wheat | nucleus | 68.0 | 32.54 |
| TraesCS2B01G364600.1 | Wheat | nucleus, plastid | 68.0 | 32.54 |
| Os04t0487300-01 | Rice | nucleus | 50.0 | 29.94 |
| Zm00001d003242_P001 | Maize | mitochondrion | 56.0 | 27.18 |
| KXG26596 | Sorghum | nucleus | 56.0 | 27.18 |
| GSMUA_AchrUn_... | Banana | nucleus | 54.0 | 26.09 |
| Solyc05g051790.2.1 | Tomato | nucleus | 48.0 | 25.53 |
| CDY37407 | Canola | nucleus | 51.0 | 24.76 |
| Bra031350.1-P | Field mustard | nucleus | 51.0 | 24.76 |
| CDY10635 | Canola | nucleus | 51.0 | 24.76 |
| HORVU2Hr1G084300.6 | Barley | nucleus, plastid | 67.0 | 24.28 |
| CDY35542 | Canola | nucleus | 50.0 | 24.27 |
| CDY24303 | Canola | nucleus | 50.0 | 24.27 |
| VIT_11s0016g03530.t01 | Wine grape | nucleus | 50.0 | 24.27 |
| CDX92939 | Canola | nucleus | 50.0 | 24.27 |
| Bra001864.1-P | Field mustard | nucleus | 50.0 | 24.27 |
| AT3G22320.1 | Thale cress | nucleus | 49.0 | 23.9 |
| KRH39324 | Soybean | nucleus | 48.0 | 23.3 |
| KRH48354 | Soybean | nucleus | 48.0 | 23.3 |
| PGSC0003DMT400051454 | Potato | nucleus | 48.0 | 23.3 |
| HORVU2Hr1G084270.1 | Barley | nucleus | 47.0 | 23.04 |
| HORVU3Hr1G078930.1 | Barley | nucleus | 48.0 | 22.86 |
| PGSC0003DMT400077392 | Potato | nucleus | 47.0 | 22.82 |
| Solyc05g053510.1.1 | Tomato | nucleus | 47.0 | 22.71 |
| PGSC0003DMT400069997 | Potato | nucleus | 43.0 | 20.77 |
| Bra006521.1-P | Field mustard | nucleus | 39.0 | 19.6 |
| CDX88871 | Canola | nucleus | 39.0 | 18.4 |
| CDX70895 | Canola | nucleus | 38.0 | 18.27 |
| AT5G57980.1 | Thale cress | nucleus | 35.0 | 16.67 |
| CDY11839 | Canola | nucleus | 34.0 | 16.19 |
| CDX88650 | Canola | nucleus | 34.0 | 16.19 |
| Bra006791.1-P | Field mustard | nucleus | 34.0 | 16.19 |
| HORVU5Hr1G043080.6 | Barley | nucleus | 27.0 | 11.84 |
| HORVU0Hr1G038750.1 | Barley | nucleus | 30.0 | 11.11 |
Protein Annotations
| Gene3D:3.40.1340.10 | Gene3D:3.90.940.20 | MapMan:35.2 | UniProt:A0A287ULI0 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | EnsemblPlantsGene:HORVU6Hr1G071230 | EnsemblPlants:HORVU6Hr1G071230.1 | InterPro:IPR035913 |
| InterPro:IPR036710 | PFAM:PF01191 | PANTHER:PTHR10535 | InterPro:RNA_pol_Rpb5_N_sf | InterPro:RNA_pol_subH/Rpb5_C | InterPro:RPB5-like |
| SUPFAM:SSF53036 | SUPFAM:SSF55287 | UniParc:UPI000B486282 | SEG:seg | : | : |
Description
No Description!
Coordinates
chrchr6H:+:495908579..495909548
Molecular Weight (calculated)
11508.2 Da
IEP (calculated)
9.144
GRAVY (calculated)
-0.151
Length
100 amino acids
Sequence
(BLAST)
(BLAST)
1: MKQENVYNGV LVVQQALTAF SRNLLLGLSQ EKLQLEVFQE GELLINIKNH DLVPQHVLLT KEQKKTLLEK FTLKETQVIQ ICEPFAHYGS VGRKHIINLK
001: MLTEEELKRL YRIQKTLMQM LRDRGYFIAD SELTMTKQQF IRKHGDNMKR EDLVTLKAKR NDNSDQLYIF FPDEAKVGVK TMKMYTNRMK SENVFRAILV
101: VQQNLTPFAR TCISEISSKF HLEVFQEAEM LVNIKEHVLV PEHQVLTTEE KKTLLERYTV KETQLPRIQV TDPIARYFGL KRGQVVKIIR PSETAGRYVT
201: YRYVV
101: VQQNLTPFAR TCISEISSKF HLEVFQEAEM LVNIKEHVLV PEHQVLTTEE KKTLLERYTV KETQLPRIQV TDPIARYFGL KRGQVVKIIR PSETAGRYVT
201: YRYVV
Arabidopsis Description
NRPB5ADNA-directed RNA polymerases II and IV subunit 5A [Source:UniProtKB/Swiss-Prot;Acc:O81098]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.