CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX93029
CDY15121

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22320.1	CDX93029	AT3G24650.1	10743655
AT3G22320.1	CDY15121	AT3G24650.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031350.1-P	Field mustard	nucleus	98.54	98.54
CDY37407	Canola	nucleus	97.57	97.57
CDX92939	Canola	nucleus	94.66	94.66
CDY35542	Canola	nucleus	94.66	94.66
CDY24303	Canola	nucleus	94.66	94.66
AT3G22320.1	Thale cress	nucleus	89.32	89.76
VIT_11s0016g03530.t01	Wine grape	nucleus	82.04	82.04
Solyc03g025570.2.1	Tomato	cytosol	44.66	78.63
Solyc05g051790.2.1	Tomato	nucleus	70.87	77.66
KRH48354	Soybean	nucleus	76.7	76.7
KRH39324	Soybean	nucleus	76.7	76.7
PGSC0003DMT400051454	Potato	nucleus	76.21	76.21
PGSC0003DMT400077392	Potato	nucleus	74.76	74.76
GSMUA_AchrUn_...	Banana	nucleus	70.39	70.05
GSMUA_Achr2P00920_001	Banana	nucleus	66.5	67.16
Os01t0805800-01	Rice	nucleus	65.05	63.81
Zm00001d012557_P001	Maize	extracellular	65.05	63.81
TraesCS3D01G326800.2	Wheat	nucleus	63.59	62.38
TraesCS3B01G363400.1	Wheat	nucleus	63.59	62.38
TraesCS3A01G333200.2	Wheat	nucleus	63.59	62.38
HORVU3Hr1G078930.1	Barley	nucleus	63.59	62.38
KXG33574	Sorghum	nucleus	63.59	62.38
Solyc05g053510.1.1	Tomato	nucleus	61.16	60.87
Zm00001d003242_P001	Maize	mitochondrion	60.68	60.68
TraesCS2D01G345000.2	Wheat	nucleus	60.19	60.49
TraesCS2A01G346300.1	Wheat	nucleus	60.19	60.49
TraesCS2D01G344900.1	Wheat	nucleus	61.16	60.29
TraesCS2B01G364600.1	Wheat	nucleus, plastid	61.16	60.29
TraesCS2A01G346200.1	Wheat	nucleus	60.68	59.81
PGSC0003DMT400069997	Potato	nucleus	59.71	59.42
KXG26596	Sorghum	nucleus	59.22	59.22
TraesCS2B01G364700.1	Wheat	nucleus, plastid	58.74	59.02
CDX70895	Canola	nucleus	56.8	56.25
Os04t0487300-01	Rice	nucleus	44.66	55.09
CDX88871	Canola	nucleus	56.31	54.72
HORVU1Hr1G048500.1	Barley	endoplasmic reticulum	12.62	53.06
TraesCS2D01G344800.1	Wheat	mitochondrion, nucleus	51.46	51.96
TraesCS2A01G346100.2	Wheat	nucleus	51.46	51.96
TraesCS2B01G364500.1	Wheat	nucleus	50.97	51.47
HORVU6Hr1G071230.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	24.76	51.0
HORVU2Hr1G084270.1	Barley	nucleus	50.49	50.98
HORVU7Hr1G020400.1	Barley	cytosol, mitochondrion, nucleus, plastid	25.73	47.32
HORVU1Hr1G052270.3	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	25.73	47.32
HORVU4Hr1G028860.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	25.24	46.43
HORVU2Hr1G026650.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	24.76	45.54
CDY11839	Canola	nucleus	45.63	44.76
CDX88650	Canola	nucleus	45.63	44.76
HORVU2Hr1G084300.6	Barley	nucleus, plastid	58.74	43.84
HORVU6Hr1G011700.1	Barley	endoplasmic reticulum, nucleus	33.5	37.91
CDY06137	Canola	nucleus	35.92	32.03
CDX72073	Canola	nucleus	35.44	31.74
CDY14763	Canola	nucleus	33.5	30.94
CDY06931	Canola	nucleus	32.52	30.04
CDY13211	Canola	nucleus	32.52	27.24
CDX76143	Canola	cytosol	32.04	26.29

Protein Annotations

MapMan:15.1.6.3	Gene3D:3.40.1340.10	Gene3D:3.90.940.20	GO:A0A078F856	UniProt:A0A078F856	EnsemblPlants:CDY10635
ProteinID:CDY10635	ProteinID:CDY10635.1	InterPro:DNA_RNA_pol_RPB5_euk/virus	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00048373001	InterPro:IPR035913	InterPro:IPR036710	HAMAP:MF_00025
PFAM:PD005155	PFAM:PF01191	PFAM:PF03871	PIRSF:PIRSF000747	ScanProsite:PS01110	PANTHER:PTHR10535
InterPro:RNA_pol_Rpb5_N	InterPro:RNA_pol_Rpb5_N_sf	InterPro:RNA_pol_subH/Rpb5_C	InterPro:RNA_pol_subH/Rpb5_CS	InterPro:RPB5-like	InterPro:RpoH/RPB5
SUPFAM:SSF53036	SUPFAM:SSF55287	UniParc:UPI0004EDC850	:	:	:

Description

BnaA05g17270DBnaA05g17270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F856]

Coordinates

chrLK032005:-:163035..164285

Molecular Weight (calculated)

24297.7 Da

IEP (calculated)

9.900

GRAVY (calculated)

-0.425

Length

206 amino acids

Sequence
(BLAST)

001: MGLTEEEIKR MYRIQKTLMQ MLKDRGYFIA DSEITMTLSH FVRKYGDNMK REDLVTLRAK RNDSSDQLYV FFPDEVKVGV NTMKVYTNRM KSENVYRAIL
101: VVQQNLTPFA RNCITQISSK FHLEVFQEAE MLVNIKEHVL VPEHQVLTTE EKKTLLERYT VKETQLPRIQ VTDPIARYFG LKRGQVVKII RPSETAGRYV
201: TYRYAV

Best Arabidopsis Sequence Match ( AT3G22320.1 )
(BLAST)

001: MLTEEELKRL YRIQKTLMQM LRDRGYFIAD SELTMTKQQF IRKHGDNMKR EDLVTLKAKR NDNSDQLYIF FPDEAKVGVK TMKMYTNRMK SENVFRAILV
101: VQQNLTPFAR TCISEISSKF HLEVFQEAEM LVNIKEHVLV PEHQVLTTEE KKTLLERYTV KETQLPRIQV TDPIARYFGL KRGQVVKIIR PSETAGRYVT
201: YRYVV

Arabidopsis Description

NRPB5ADNA-directed RNA polymerases II and IV subunit 5A [Source:UniProtKB/Swiss-Prot;Acc:O81098]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.