CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014812.1-P	Field mustard	nucleus	90.84	97.02
CDY13211	Canola	nucleus	92.03	93.9
AT3G54490.1	Thale cress	nucleus	66.53	71.67
KRH62911	Soybean	nucleus	36.65	50.27
VIT_13s0139g00310.t01	Wine grape	nucleus	43.03	48.87
GSMUA_Achr9P19340_001	Banana	nucleus	19.12	48.0
KRH30040	Soybean	nucleus	43.43	46.19
Os12t0139500-01	Rice	nucleus	40.64	44.93
CDY06137	Canola	nucleus	39.44	42.86
KXG22818	Sorghum	mitochondrion	18.73	42.73
CDX72073	Canola	nucleus	39.04	42.61
CDY06931	Canola	nucleus	37.85	42.6
CDY14763	Canola	nucleus	37.45	42.15
TraesCS5B01G132800.1	Wheat	nucleus	37.85	42.04
TraesCS5A01G131700.1	Wheat	nucleus	37.85	42.04
HORVU5Hr1G043080.6	Barley	nucleus	37.45	41.23
TraesCS5D01G140300.1	Wheat	nucleus	36.65	40.71
EES09238	Sorghum	nucleus	41.43	39.54
TraesCS4B01G133200.1	Wheat	nucleus	39.04	38.89
TraesCS4D01G128200.1	Wheat	nucleus	39.04	38.89
TraesCS4A01G185400.1	Wheat	nucleus	38.65	38.49
HORVU0Hr1G038750.1	Barley	nucleus	39.44	36.67
CDX92939	Canola	nucleus	26.69	32.52
CDY35542	Canola	nucleus	26.69	32.52
CDY24303	Canola	nucleus	26.69	32.52
CDY10635	Canola	nucleus	26.29	32.04
CDY37407	Canola	nucleus	25.9	31.55
Os11t0143400-00	Rice	nucleus	40.64	30.36
CDY11839	Canola	nucleus	24.3	29.05
CDX88650	Canola	nucleus	23.9	28.57
CDX88871	Canola	nucleus	23.9	28.3
CDX70895	Canola	nucleus	23.11	27.88

Protein Annotations

MapMan:15.1.6.3	Gene3D:3.40.1340.10	Gene3D:3.90.940.20	GO:A0A078CM68	EnsemblPlants:CDX76143	ProteinID:CDX76143
ProteinID:CDX76143.1	InterPro:DNA_RNA_pol_RPB5_euk/virus	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00126433001	InterPro:IPR035913	InterPro:IPR036710	PFAM:PD005155	PFAM:PF01191
PFAM:PF03871	PIRSF:PIRSF000747	PANTHER:PTHR10535	PANTHER:PTHR10535:SF6	InterPro:RNA_pol_Rpb5_N	InterPro:RNA_pol_Rpb5_N_sf
InterPro:RNA_pol_subH/Rpb5_C	InterPro:RPB5-like	SUPFAM:SSF53036	SUPFAM:SSF55287	TMHMM:TMhelix	UniParc:UPI0004EDE1A4
SEG:seg	:	:	:	:	:

Description

BnaA04g04070D

Coordinates

chrLK031806:-:1357308..1358980

Molecular Weight (calculated)

28188.4 Da

IEP (calculated)

8.472

GRAVY (calculated)

-0.180

Length

251 amino acids

Sequence
(BLAST)

001: MEELMAIERS SENGVSTFDD GAHSHCIAKT EDKGGVESKR FYLARTTALE MLRDRGYQVS DAELSLSPSE FRSGFGEKPD LERLRISVPL RSNPMKKTLT
101: FLIMGLLLEV STNILVLFMG SEPVTVKTVR VIHSQVSSTV GLHGLILVLQ SKMNHFAKKE LATFPCTVET FPIGDLLVNI TKHTGQPKIE ILTKEEKEKL
201: LSEHALEDKQ LPLLKEKDSF VRYHGLKKGQ VVKITYSKEP VGHFVTYRCI V

Best Arabidopsis Sequence Match ( AT3G54490.1 )
(BLAST)

001: MEETMAEEGC CENVESTFDD GTNCISKTED TGGIESKRFY LARTTAFEML RDRGYEVNEA ELSLTLSEFR SVFGEKPELE RLRICVPLRS DPKKKILVVF
101: MGTEPITVKS VRALHIQISN NVGLHAMILV LQSKMNHFAQ KALTTFPFTV ETFPIEDLLV NITKHIQQPK IEILNKEEKE QLLRKHALED KQLPYLQEKD
201: SFVRYYGLKK KQVVKITYSK EPVGDFVTYR CII

Arabidopsis Description

NRPE5CDNA-directed RNA polymerase V subunit 5C [Source:UniProtKB/Swiss-Prot;Acc:Q9M1H8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.