CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30040	Soybean	nucleus	84.15	65.25
GSMUA_Achr9P19340_001	Banana	nucleus	27.87	51.0
VIT_13s0139g00310.t01	Wine grape	nucleus	49.73	41.18
KRG95122	Soybean	nucleus	44.81	40.0
Bra014812.1-P	Field mustard	nucleus	50.82	39.57
AT3G54490.1	Thale cress	nucleus	49.18	38.63
CDY13211	Canola	nucleus	51.37	38.21
KRH66799	Soybean	nucleus	49.18	38.14
CDX76143	Canola	cytosol	50.27	36.65
KXG22818	Sorghum	mitochondrion	21.86	36.36
Os12t0139500-01	Rice	nucleus	43.17	34.8
TraesCS5A01G131700.1	Wheat	nucleus	40.44	32.74
TraesCS5B01G132800.1	Wheat	nucleus	40.44	32.74
HORVU5Hr1G043080.6	Barley	nucleus	39.89	32.02
TraesCS5D01G140300.1	Wheat	nucleus	38.8	31.42
TraesCS4A01G185400.1	Wheat	nucleus	42.08	30.56
TraesCS4B01G133200.1	Wheat	nucleus	42.08	30.56
TraesCS4D01G128200.1	Wheat	nucleus	42.08	30.56
KRH48354	Soybean	nucleus	33.33	29.61
KRH39324	Soybean	nucleus	32.79	29.13
HORVU0Hr1G038750.1	Barley	nucleus	40.98	27.78
EES09238	Sorghum	nucleus	37.7	26.24
Os11t0143400-00	Rice	nucleus	42.62	23.21

Protein Annotations

MapMan:15.1.6.3	Gene3D:3.40.1340.10	Gene3D:3.90.940.20	EMBL:ACUP02002415	InterPro:DNA_RNA_pol_RPB5_euk/virus	EnsemblPlantsGene:GLYMA_04G141500
GO:GO:0000428	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
InterPro:IPR035913	InterPro:IPR036710	UniProt:K7KK93	EnsemblPlants:KRH62911	ProteinID:KRH62911	ProteinID:KRH62911.1
PFAM:PD005155	PFAM:PF01191	PFAM:PF03871	PIRSF:PIRSF000747	PANTHER:PTHR10535	PANTHER:PTHR10535:SF2
InterPro:RNA_pol_Rpb5_N	InterPro:RNA_pol_Rpb5_N_sf	InterPro:RNA_pol_subH/Rpb5_C	InterPro:RPB5-like	SUPFAM:SSF53036	SUPFAM:SSF55287
UniParc:UPI000233A7CB	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:23838512..23841401

Molecular Weight (calculated)

20817.2 Da

IEP (calculated)

8.324

GRAVY (calculated)

-0.256

Length

183 amino acids

Sequence
(BLAST)

001: MLQDRGYDAI QHANISPSLT EFCSRFSQNP NPQTLDFCVP HLSNTVQVVF VGPKEIRKGT VNEICSQIAD KGSLKWLILV VKSKMTSFAK KDLENFPFKV
101: ETIKIDDLLV NITKHVLQPK YEILTDDEKQ ALLTKHNLDE KQLPHMLKTD TIARYYGLEK GQVVKITHSG PVVNFDVSYR CVV

Best Arabidopsis Sequence Match ( AT3G54490.1 )
(BLAST)

001: MEETMAEEGC CENVESTFDD GTNCISKTED TGGIESKRFY LARTTAFEML RDRGYEVNEA ELSLTLSEFR SVFGEKPELE RLRICVPLRS DPKKKILVVF
101: MGTEPITVKS VRALHIQISN NVGLHAMILV LQSKMNHFAQ KALTTFPFTV ETFPIEDLLV NITKHIQQPK IEILNKEEKE QLLRKHALED KQLPYLQEKD
201: SFVRYYGLKK KQVVKITYSK EPVGDFVTYR CII

Arabidopsis Description

NRPE5CDNA-directed RNA polymerase V subunit 5C [Source:UniProtKB/Swiss-Prot;Acc:Q9M1H8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.