Factsheet for TraesCS4D01G128200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G185400.1	Wheat	nucleus	97.62	97.62
TraesCS4B01G133200.1	Wheat	nucleus	97.22	97.22
HORVU0Hr1G038750.1	Barley	nucleus	86.51	80.74
TraesCS5D01G140300.1	Wheat	nucleus	65.87	73.45
GSMUA_Achr9P19340_001	Banana	nucleus	26.98	68.0
EES09238	Sorghum	nucleus	69.05	66.16
PGSC0003DMT400057891	Potato	nucleus	23.41	59.6
VIT_08s0007g05540.t01	Wine grape	nucleus	44.44	48.91
Solyc04g040170.2.1	Tomato	nucleus	43.65	48.46
PGSC0003DMT400027609	Potato	cytosol	43.65	48.46
KRG95122	Soybean	nucleus	38.49	47.32
Solyc01g098320.2.1	Tomato	nucleus	42.46	47.14
KRH66799	Soybean	nucleus	44.05	47.03
VIT_13s0139g00310.t01	Wine grape	nucleus	40.08	45.7
CDY14763	Canola	nucleus	39.68	44.84
AT3G57080.1	Thale cress	nucleus	39.29	44.59
Bra016940.1-P	Field mustard	nucleus	39.29	44.39
Bra007300.1-P	Field mustard	nucleus	40.48	44.16
CDY06137	Canola	nucleus	40.48	44.16
CDY06931	Canola	nucleus	38.89	43.95
CDX72073	Canola	nucleus	40.08	43.91
AT2G41340.1	Thale cress	nucleus	37.3	43.12
KRH62911	Soybean	nucleus	30.56	42.08
Bra014812.1-P	Field mustard	nucleus	38.89	41.7
AT3G54490.1	Thale cress	nucleus	38.49	41.63
CDY13211	Canola	nucleus	39.29	40.24
CDX76143	Canola	cytosol	38.89	39.04
KRH30040	Soybean	nucleus	36.11	38.56
TraesCS2D01G344800.1	Wheat	mitochondrion, nucleus	30.56	37.75
TraesCS3D01G326800.2	Wheat	nucleus	29.76	35.71
TraesCS2D01G345000.2	Wheat	nucleus	28.97	35.61
TraesCS2D01G344900.1	Wheat	nucleus	28.17	33.97

Protein Annotations

MapMan:15.1.6.3	Gene3D:3.40.1340.10	Gene3D:3.90.940.20	InterPro:DNA_RNA_pol_RPB5_euk/virus	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	InterPro:IPR035913	InterPro:IPR036710	PFAM:PD005155
PFAM:PF01191	PFAM:PF03871	PIRSF:PIRSF000747	PANTHER:PTHR10535	PANTHER:PTHR10535:SF2	InterPro:RNA_pol_Rpb5_N
InterPro:RNA_pol_Rpb5_N_sf	InterPro:RNA_pol_subH/Rpb5_C	InterPro:RPB5-like	SUPFAM:SSF53036	SUPFAM:SSF55287	EnsemblPlantsGene:TraesCS4D01G128200
EnsemblPlants:TraesCS4D01G128200.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4D:+:112587978..112591146

Molecular Weight (calculated)

28321.1 Da

IEP (calculated)

6.152

GRAVY (calculated)

-0.114

Length

252 amino acids

Sequence
(BLAST)

001: MNQFAPQQSS LAMDSGESSA ASNAAHAAMA VDYAPEVAGC VSSMVDLGCA AGVESQRLFL ARRTALEMLR DRGYSVPEDE LARTLPEFRA WWSETPEIER
101: LSFSTTLASD ESNKVRIVFC PPEPVKIAAI REVYVRIKEE NLSCLILILQ SKITSRARES IKEMFKFKVD VFQITELLVN ITKHVLKPKH EVLTAEEKAK
201: LLKQYNVVDS QLPRMLETDA VARYYGLGKG TVVKFTYDSE LTVDHVTYRC IF

Best Arabidopsis Sequence Match ( AT3G57080.1 )
(BLAST)

001: MEVKGKETAS VLCLSKYVDL SSEESHRYYL ARRNGLQMLR DRGYEVSDED INLSLHDFRT VYGERPDVDR LRISALHRSD STKKVKIVFF GTSMVKVNAI
101: RSVVADILSQ ETITGLILVL QNHVTNQALK AIELFSFKVE IFQITDLLVN ITKHSLKPQH QVLNDEEKTT LLKKFSIEEK QLPRISKKDA IVRYYGLEKG
201: QVVKVNYRGE LTESHVAFRC VW

Arabidopsis Description

NRPE5ADNA-directed RNA polymerase V subunit 5A [Source:UniProtKB/Swiss-Prot;Acc:Q9M1J2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.