Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016940.1-P | Field mustard | nucleus | 72.48 | 70.85 |
| CDY06931 | Canola | nucleus | 72.02 | 70.4 |
| CDY14763 | Canola | nucleus | 71.1 | 69.51 |
| AT3G57080.1 | Thale cress | nucleus | 67.43 | 66.22 |
| PGSC0003DMT400057891 | Potato | nucleus | 27.06 | 59.6 |
| KRG95122 | Soybean | nucleus | 51.38 | 54.63 |
| VIT_08s0007g05540.t01 | Wine grape | nucleus | 57.34 | 54.59 |
| KRH66799 | Soybean | nucleus | 58.26 | 53.81 |
| Solyc04g040170.2.1 | Tomato | nucleus | 55.05 | 52.86 |
| PGSC0003DMT400027609 | Potato | cytosol | 54.59 | 52.42 |
| GSMUA_Achr9P19340_001 | Banana | nucleus | 22.94 | 50.0 |
| Solyc01g098320.2.1 | Tomato | nucleus | 50.46 | 48.46 |
| Os12t0139500-01 | Rice | nucleus | 44.04 | 42.29 |
| TraesCS5A01G131700.1 | Wheat | nucleus | 43.12 | 41.59 |
| TraesCS5B01G132800.1 | Wheat | nucleus | 42.2 | 40.71 |
| AT3G54490.1 | Thale cress | nucleus | 43.12 | 40.34 |
| TraesCS5D01G140300.1 | Wheat | nucleus | 41.74 | 40.27 |
| HORVU5Hr1G043080.6 | Barley | nucleus | 41.28 | 39.47 |
| KXG22818 | Sorghum | mitochondrion | 19.27 | 38.18 |
| TraesCS4B01G133200.1 | Wheat | nucleus | 43.58 | 37.7 |
| TraesCS4A01G185400.1 | Wheat | nucleus | 43.12 | 37.3 |
| TraesCS4D01G128200.1 | Wheat | nucleus | 43.12 | 37.3 |
| EES09238 | Sorghum | nucleus | 43.12 | 35.74 |
| HORVU0Hr1G038750.1 | Barley | nucleus | 42.66 | 34.44 |
| AT3G22320.1 | Thale cress | nucleus | 32.11 | 34.15 |
| AT5G57980.1 | Thale cress | nucleus | 29.82 | 30.95 |
| AT3G16680.1 | Thale cress | golgi | 11.47 | 28.74 |
| Os11t0143400-00 | Rice | nucleus | 43.58 | 28.27 |
Protein Annotations
| MapMan:15.1.6.3 | Gene3D:3.40.1340.10 | Gene3D:3.90.940.20 | EntrezGene:818732 | UniProt:A0A178VXX0 | ProteinID:AAC78539.1 |
| ProteinID:AEC09961.1 | ArrayExpress:AT2G41340 | EnsemblPlantsGene:AT2G41340 | RefSeq:AT2G41340 | TAIR:AT2G41340 | RefSeq:AT2G41340-TAIR-G |
| EnsemblPlants:AT2G41340.1 | TAIR:AT2G41340.1 | EMBL:AY078926 | InterPro:DNA_RNA_pol_RPB5_euk/virus | GO:GO:0000418 | GO:GO:0000419 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 |
| InterPro:IPR035913 | InterPro:IPR036710 | RefSeq:NP_181665.1 | ProteinID:OAP10684.1 | PFAM:PD005155 | PFAM:PF01191 |
| PFAM:PF03871 | PIRSF:PIRSF000747 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007098 |
| PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 |
| PO:PO:0020038 | PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR10535 | PANTHER:PTHR10535:SF2 | UniProt:Q9ZVB9 |
| InterPro:RNA_pol_Rpb5_N | InterPro:RNA_pol_Rpb5_N_sf | InterPro:RNA_pol_subH/Rpb5_C | InterPro:RPB5-like | Symbol:RPB5D | SUPFAM:SSF53036 |
| SUPFAM:SSF55287 | UniParc:UPI0000048634 | : | : | : | : |
Description
NRPD5BDNA-directed RNA polymerases IV and V subunit 5B [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVB9]
Coordinates
chr2:+:17228760..17231051
Molecular Weight (calculated)
24902.2 Da
IEP (calculated)
9.033
GRAVY (calculated)
-0.256
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGKGKEIVV GHSISKSSVE CHKYYLARRT TMEMLRDRGY DVSDEDINLS LQQFRALYGE HPDVDLLRIS AKHRFDSSKK ISVVFCGTGI VKVNAMRVIA
101: ADVLSRENIT GLILVLQSHI TNQALKAVEL FSFKVELFEI TDLLVNVSKH VLRPKHQVLN DKEKESLLKK FSIEEKQLPR LSSKDPIVRY YGLETGQVMK
201: VTYKDELSES HVTYRCVS
101: ADVLSRENIT GLILVLQSHI TNQALKAVEL FSFKVELFEI TDLLVNVSKH VLRPKHQVLN DKEKESLLKK FSIEEKQLPR LSSKDPIVRY YGLETGQVMK
201: VTYKDELSES HVTYRCVS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.