Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P19340_001 | Banana | nucleus | 60.61 | 60.0 |
| KXG22818 | Sorghum | mitochondrion | 47.47 | 42.73 |
| Solyc01g098320.2.1 | Tomato | nucleus | 85.86 | 37.44 |
| PGSC0003DMT400027609 | Potato | cytosol | 80.81 | 35.24 |
| KRG95122 | Soybean | nucleus | 62.63 | 30.24 |
| VIT_08s0007g05540.t01 | Wine grape | nucleus | 69.7 | 30.13 |
| KRH66799 | Soybean | nucleus | 69.7 | 29.24 |
| AT3G57080.1 | Thale cress | nucleus | 63.64 | 28.38 |
| AT2G41340.1 | Thale cress | nucleus | 59.6 | 27.06 |
| CDX72073 | Canola | nucleus | 62.63 | 26.96 |
| Bra007300.1-P | Field mustard | nucleus | 61.62 | 26.41 |
| CDY06137 | Canola | nucleus | 61.62 | 26.41 |
| Os12t0139500-01 | Rice | nucleus | 59.6 | 25.99 |
| TraesCS5B01G132800.1 | Wheat | nucleus | 56.57 | 24.78 |
| TraesCS5A01G131700.1 | Wheat | nucleus | 56.57 | 24.78 |
| Bra016940.1-P | Field mustard | nucleus | 55.56 | 24.66 |
| HORVU5Hr1G043080.6 | Barley | nucleus | 56.57 | 24.56 |
| CDY14763 | Canola | nucleus | 54.55 | 24.22 |
| CDY06931 | Canola | nucleus | 54.55 | 24.22 |
| TraesCS5D01G140300.1 | Wheat | nucleus | 54.55 | 23.89 |
| TraesCS4A01G185400.1 | Wheat | nucleus | 59.6 | 23.41 |
| TraesCS4D01G128200.1 | Wheat | nucleus | 59.6 | 23.41 |
| TraesCS4B01G133200.1 | Wheat | nucleus | 58.59 | 23.02 |
| EES09238 | Sorghum | nucleus | 59.6 | 22.43 |
| HORVU0Hr1G038750.1 | Barley | nucleus | 60.61 | 22.22 |
| PGSC0003DMT400051454 | Potato | nucleus | 45.45 | 21.84 |
| PGSC0003DMT400077392 | Potato | nucleus | 44.44 | 21.36 |
| PGSC0003DMT400069997 | Potato | nucleus | 39.39 | 18.84 |
| Os11t0143400-00 | Rice | nucleus | 58.59 | 17.26 |
Protein Annotations
| MapMan:15.1.6.3 | Gene3D:3.90.940.20 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 |
| GO:GO:0003899 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | InterPro:IPR035913 | UniProt:M1C1U5 | PFAM:PD005155 |
| PFAM:PF01191 | EnsemblPlantsGene:PGSC0003DMG401022480 | PGSC:PGSC0003DMG401022480 | EnsemblPlants:PGSC0003DMT400057891 | PANTHER:PTHR10535 | PANTHER:PTHR10535:SF2 |
| InterPro:RNA_pol_subH/Rpb5_C | InterPro:RPB5-like | SUPFAM:SSF55287 | UniParc:UPI00029576E4 | : | : |
Description
DNA-directed RNA polymerase II [Source:PGSC_GENE;Acc:PGSC0003DMG401022480]
Coordinates
chr1:+:75930576..75932373
Molecular Weight (calculated)
11680.2 Da
IEP (calculated)
8.990
GRAVY (calculated)
-0.549
Length
99 amino acids
Sequence
(BLAST)
(BLAST)
1: MTNPAMKVVE DSPFKTEIFQ ITDLLVNITK HVLKPKHELL TNTEKEQLLK KYNLEDKQLP RMSQKDAIAR YYGLEKGQVV KVTYNNEIIE THVTYRCVW
001: MEVKGKETAS VLCLSKYVDL SSEESHRYYL ARRNGLQMLR DRGYEVSDED INLSLHDFRT VYGERPDVDR LRISALHRSD STKKVKIVFF GTSMVKVNAI
101: RSVVADILSQ ETITGLILVL QNHVTNQALK AIELFSFKVE IFQITDLLVN ITKHSLKPQH QVLNDEEKTT LLKKFSIEEK QLPRISKKDA IVRYYGLEKG
201: QVVKVNYRGE LTESHVAFRC VW
101: RSVVADILSQ ETITGLILVL QNHVTNQALK AIELFSFKVE IFQITDLLVN ITKHSLKPQH QVLNDEEKTT LLKKFSIEEK QLPRISKKDA IVRYYGLEKG
201: QVVKVNYRGE LTESHVAFRC VW
Arabidopsis Description
NRPE5ADNA-directed RNA polymerase V subunit 5A [Source:UniProtKB/Swiss-Prot;Acc:Q9M1J2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.