Factsheet for GSMUA_Achr9P19340_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057891	Potato	nucleus	60.0	60.61
KXG22818	Sorghum	mitochondrion	52.0	47.27
Os12t0139500-01	Rice	nucleus	67.0	29.52
Solyc04g040170.2.1	Tomato	nucleus	65.0	28.63
PGSC0003DMT400027609	Potato	cytosol	65.0	28.63
KRH62911	Soybean	nucleus	51.0	27.87
Solyc01g098320.2.1	Tomato	nucleus	63.0	27.75
HORVU5Hr1G043080.6	Barley	nucleus	62.0	27.19
VIT_08s0007g05540.t01	Wine grape	nucleus	62.0	27.07
TraesCS5B01G132800.1	Wheat	nucleus	61.0	26.99
TraesCS5A01G131700.1	Wheat	nucleus	61.0	26.99
TraesCS4A01G185400.1	Wheat	nucleus	68.0	26.98
TraesCS4D01G128200.1	Wheat	nucleus	68.0	26.98
KRG95122	Soybean	nucleus	55.0	26.83
TraesCS4B01G133200.1	Wheat	nucleus	66.0	26.19
TraesCS5D01G140300.1	Wheat	nucleus	59.0	26.11
KRH66799	Soybean	nucleus	61.0	25.85
VIT_13s0139g00310.t01	Wine grape	nucleus	57.0	25.79
AT3G57080.1	Thale cress	nucleus	57.0	25.68
EES09238	Sorghum	nucleus	67.0	25.48
HORVU0Hr1G038750.1	Barley	nucleus	68.0	25.19
CDX72073	Canola	nucleus	57.0	24.78
CDY06137	Canola	nucleus	57.0	24.68
Bra007300.1-P	Field mustard	nucleus	57.0	24.68
CDY14763	Canola	nucleus	53.0	23.77
Bra016940.1-P	Field mustard	nucleus	53.0	23.77
CDY06931	Canola	nucleus	52.0	23.32
AT2G41340.1	Thale cress	nucleus	50.0	22.94
GSMUA_AchrUn_...	Banana	nucleus	46.0	22.22
KRH30040	Soybean	nucleus	52.0	22.03
GSMUA_Achr2P00920_001	Banana	nucleus	44.0	21.57
AT3G54490.1	Thale cress	nucleus	47.0	20.17
Os11t0143400-00	Rice	nucleus	66.0	19.64
Bra014812.1-P	Field mustard	nucleus	46.0	19.57
CDX76143	Canola	cytosol	48.0	19.12
CDY13211	Canola	nucleus	47.0	19.11

Protein Annotations

MapMan:15.1.6.3	Gene3D:3.90.940.20	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003899	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	EnsemblPlantsGene:GSMUA_Achr9G19340_001	EnsemblPlants:GSMUA_Achr9P19340_001	EnsemblPlants:GSMUA_Achr9T19340_001
InterPro:IPR035913	UniProt:M0U1P1	PFAM:PD005155	PFAM:PF01191	PANTHER:PTHR10535	PANTHER:PTHR10535:SF2
InterPro:RNA_pol_subH/Rpb5_C	InterPro:RPB5-like	SUPFAM:SSF55287	UniParc:UPI0002956295	:	:

Description

Putative DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Source:GMGC_GENE;Acc:GSMUA_Achr9G19340_001]

Coordinates

chr9:-:19639200..19648129

Molecular Weight (calculated)

11722.4 Da

IEP (calculated)

9.006

GRAVY (calculated)

-0.272

Length

100 amino acids

Sequence
(BLAST)

1: MTSKARELTE EIFKFRLEIF QITELLVNIT KHVLKPRHVL LAAEEKEKLI AKYNVEDIQL PRMLKSDAVA RYYGFEKGQV VKVTYNGELT GHHETYRCIV

Best Arabidopsis Sequence Match ( AT3G57080.1 )
(BLAST)

001: MEVKGKETAS VLCLSKYVDL SSEESHRYYL ARRNGLQMLR DRGYEVSDED INLSLHDFRT VYGERPDVDR LRISALHRSD STKKVKIVFF GTSMVKVNAI
101: RSVVADILSQ ETITGLILVL QNHVTNQALK AIELFSFKVE IFQITDLLVN ITKHSLKPQH QVLNDEEKTT LLKKFSIEEK QLPRISKKDA IVRYYGLEKG
201: QVVKVNYRGE LTESHVAFRC VW

Arabidopsis Description

NRPE5ADNA-directed RNA polymerase V subunit 5A [Source:UniProtKB/Swiss-Prot;Acc:Q9M1J2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.