CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62911	Soybean	nucleus	65.25	84.15
GSMUA_Achr9P19340_001	Banana	nucleus	22.03	52.0
VIT_13s0139g00310.t01	Wine grape	nucleus	47.46	50.68
KRG95122	Soybean	nucleus	41.53	47.8
KRH66799	Soybean	nucleus	47.03	47.03
Bra014812.1-P	Field mustard	nucleus	46.61	46.81
CDY13211	Canola	nucleus	47.03	45.12
AT3G54490.1	Thale cress	nucleus	44.49	45.06
Os12t0139500-01	Rice	nucleus	42.37	44.05
CDX76143	Canola	cytosol	46.19	43.43
TraesCS5B01G132800.1	Wheat	nucleus	37.71	39.38
TraesCS5A01G131700.1	Wheat	nucleus	37.71	39.38
HORVU5Hr1G043080.6	Barley	nucleus	36.86	38.16
TraesCS5D01G140300.1	Wheat	nucleus	36.44	38.05
KXG22818	Sorghum	mitochondrion	17.37	37.27
TraesCS4A01G185400.1	Wheat	nucleus	38.56	36.11
TraesCS4D01G128200.1	Wheat	nucleus	38.56	36.11
TraesCS4B01G133200.1	Wheat	nucleus	37.29	34.92
EES09238	Sorghum	nucleus	38.14	34.22
HORVU0Hr1G038750.1	Barley	nucleus	37.71	32.96
KRH48354	Soybean	nucleus	27.97	32.04
KRH39324	Soybean	nucleus	27.54	31.55
Os11t0143400-00	Rice	nucleus	41.95	29.46

Protein Annotations

EntrezGene:100799908	MapMan:15.1.6.3	Gene3D:3.40.1340.10	Gene3D:3.90.940.20	UniProt:A0A0R0HR65	EMBL:ACUP02006841
InterPro:DNA_RNA_pol_RPB5_euk/virus	EnsemblPlantsGene:GLYMA_11G154500	GO:GO:0000428	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	InterPro:IPR035913	InterPro:IPR036710	EnsemblPlants:KRH30040	ProteinID:KRH30040
ProteinID:KRH30040.1	PFAM:PD005155	PFAM:PF01191	PFAM:PF03871	PIRSF:PIRSF000747	PANTHER:PTHR10535
PANTHER:PTHR10535:SF2	InterPro:RNA_pol_Rpb5_N	InterPro:RNA_pol_Rpb5_N_sf	InterPro:RNA_pol_subH/Rpb5_C	InterPro:RPB5-like	SUPFAM:SSF53036
SUPFAM:SSF55287	UniParc:UPI0006ED9C2E	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:12506952..12509488

Molecular Weight (calculated)

26813.5 Da

IEP (calculated)

8.606

GRAVY (calculated)

-0.306

Length

236 amino acids

Sequence
(BLAST)

001: MEGKRESVTE KSLTEHFIFQ NAMECIAKMT KDNGSMESLR YFLSRRTLLE MLQDRGYDVV QHANLSPSLA EFRSRFGQNP NPQTLAFCVS HLSNPSNTVQ
101: VVFAGTDDIR KGTVNEICTQ IADKGRLKGL ILVVQSKMTS FAKKDLESLP FKVEIIRIDD LLVNITKHVL QPKYEILTDD EKKALLTKHN LDEKQLPHML
201: KTDAIASYYG LEKGQVVKIT HRGPVVDFHV SYRCVV

Best Arabidopsis Sequence Match ( AT3G54490.1 )
(BLAST)

001: MEETMAEEGC CENVESTFDD GTNCISKTED TGGIESKRFY LARTTAFEML RDRGYEVNEA ELSLTLSEFR SVFGEKPELE RLRICVPLRS DPKKKILVVF
101: MGTEPITVKS VRALHIQISN NVGLHAMILV LQSKMNHFAQ KALTTFPFTV ETFPIEDLLV NITKHIQQPK IEILNKEEKE QLLRKHALED KQLPYLQEKD
201: SFVRYYGLKK KQVVKITYSK EPVGDFVTYR CII

Arabidopsis Description

NRPE5CDNA-directed RNA polymerase V subunit 5C [Source:UniProtKB/Swiss-Prot;Acc:Q9M1H8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.