Factsheet for VIT_13s0139g00310.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P19340_001	Banana	nucleus	25.79	57.0
VIT_08s0007g05540.t01	Wine grape	nucleus	53.85	51.97
KRH62911	Soybean	nucleus	41.18	49.73
AT3G54490.1	Thale cress	nucleus	50.68	48.07
KRH30040	Soybean	nucleus	50.68	47.46
Os12t0139500-01	Rice	nucleus	47.96	46.7
Bra014812.1-P	Field mustard	nucleus	48.42	45.53
CDY13211	Canola	nucleus	48.87	43.9
TraesCS5B01G132800.1	Wheat	nucleus	44.34	43.36
CDX76143	Canola	cytosol	48.87	43.03
TraesCS5A01G131700.1	Wheat	nucleus	43.89	42.92
HORVU5Hr1G043080.6	Barley	nucleus	43.89	42.54
TraesCS5D01G140300.1	Wheat	nucleus	42.99	42.04
KXG22818	Sorghum	mitochondrion	20.36	40.91
TraesCS4D01G128200.1	Wheat	nucleus	45.7	40.08
TraesCS4A01G185400.1	Wheat	nucleus	45.7	40.08
EES09238	Sorghum	nucleus	47.06	39.54
TraesCS4B01G133200.1	Wheat	nucleus	44.34	38.89
HORVU0Hr1G038750.1	Barley	nucleus	45.25	37.04
VIT_11s0016g03530.t01	Wine grape	nucleus	30.77	33.01
Os11t0143400-00	Rice	nucleus	47.51	31.25

Protein Annotations

EntrezGene:100258335	wikigene:100258335	MapMan:15.1.6.3	Gene3D:3.40.1340.10	Gene3D:3.90.940.20	ProteinID:CCB58674
ProteinID:CCB58674.1	InterPro:DNA_RNA_pol_RPB5_euk/virus	UniProt:F6HVG1	EMBL:FN596255	GO:GO:0000419	GO:GO:0000428
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	InterPro:IPR035913
InterPro:IPR036710	EntrezGene:LOC100258335	wikigene:LOC100258335	PFAM:PD005155	PFAM:PF01191	PFAM:PF03871
PIRSF:PIRSF000747	PANTHER:PTHR10535	PANTHER:PTHR10535:SF2	InterPro:RNA_pol_Rpb5_N	InterPro:RNA_pol_Rpb5_N_sf	InterPro:RNA_pol_subH/Rpb5_C
InterPro:RPB5-like	SUPFAM:SSF53036	SUPFAM:SSF55287	TIGR:TC68580	UniParc:UPI00015CC3CD	ArrayExpress:VIT_13s0139g00310
EnsemblPlantsGene:VIT_13s0139g00310	EnsemblPlants:VIT_13s0139g00310.t01	unigene:Vvi.9613	RefSeq:XP_002269723	RefSeq:XP_002269723.2	:

Description

No Description!

Coordinates

chr13:+:20556551..20562741

Molecular Weight (calculated)

25358.8 Da

IEP (calculated)

9.837

GRAVY (calculated)

-0.342

Length

221 amino acids

Sequence
(BLAST)

001: MESQAGSHGN GSCITADMEQ GSIESYRYYL SRRTLFQMLS DRGYNVPHSE LTRSLSDFRA SFGHNPDPSR LRICLPLISS PSKKILVVFC GTDEIRKAVI
101: RVIFQQINRE GLHRLILVLQ SKMNSHARKV VDEYPIKVEF FQITELLINI TKHVSVPKHE ILSAQEKRKL VNKYKLEDKQ FPIMQKDDAI ARYYGLEKGQ
201: VVKITYKGGM TDSLVTYRCV S

Best Arabidopsis Sequence Match ( AT3G54490.1 )
(BLAST)

001: MEETMAEEGC CENVESTFDD GTNCISKTED TGGIESKRFY LARTTAFEML RDRGYEVNEA ELSLTLSEFR SVFGEKPELE RLRICVPLRS DPKKKILVVF
101: MGTEPITVKS VRALHIQISN NVGLHAMILV LQSKMNHFAQ KALTTFPFTV ETFPIEDLLV NITKHIQQPK IEILNKEEKE QLLRKHALED KQLPYLQEKD
201: SFVRYYGLKK KQVVKITYSK EPVGDFVTYR CII

Arabidopsis Description

NRPE5CDNA-directed RNA polymerase V subunit 5C [Source:UniProtKB/Swiss-Prot;Acc:Q9M1H8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.