Skip to main content
crop-pal logo
Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 2
  • nucleus 3
  • mitochondrion 1
  • cytosol 1
PPI

Inferred distinct locusB in Crop

locusBlocations
VIT_07s0005g05400.t01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G22320.1 VIT_07s0005g05400.t01 AT3G24650.1 10743655
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc05g051790.2.1 Tomato nucleus 78.64 86.17
Bra001864.1-P Field mustard nucleus 84.47 84.47
CDY35542 Canola nucleus 84.47 84.47
CDY24303 Canola nucleus 84.47 84.47
CDX92939 Canola nucleus 84.47 84.47
KRH39324 Soybean nucleus 83.5 83.5
KRH48354 Soybean nucleus 83.5 83.5
PGSC0003DMT400077392 Potato nucleus 83.5 83.5
AT3G22320.1 Thale cress nucleus 83.01 83.41
Bra031350.1-P Field mustard nucleus 82.52 82.52
PGSC0003DMT400051454 Potato nucleus 82.52 82.52
CDY10635 Canola nucleus 82.04 82.04
CDY37407 Canola nucleus 82.04 82.04
Solyc03g025570.2.1 Tomato cytosol 45.63 80.34
GSMUA_AchrUn_... Banana nucleus 77.18 76.81
GSMUA_Achr2P00920_001 Banana nucleus 73.79 74.51
Os01t0805800-01 Rice nucleus 68.93 67.62
KXG33574 Sorghum nucleus 68.93 67.62
Zm00001d012557_P001 Maize extracellular 68.45 67.14
Zm00001d003242_P001 Maize mitochondrion 66.5 66.5
KXG26596 Sorghum nucleus 65.53 65.53
HORVU3Hr1G078930.1 Barley nucleus 66.5 65.24
TraesCS3D01G326800.2 Wheat nucleus 66.5 65.24
TraesCS3B01G363400.1 Wheat nucleus 66.5 65.24
TraesCS3A01G333200.2 Wheat nucleus 66.5 65.24
Solyc05g053510.1.1 Tomato nucleus 65.53 65.22
TraesCS2D01G345000.2 Wheat nucleus 64.56 64.88
TraesCS2A01G346300.1 Wheat nucleus 64.08 64.39
PGSC0003DMT400069997 Potato nucleus 64.08 63.77
TraesCS2B01G364600.1 Wheat nucleus, plastid 64.56 63.64
TraesCS2A01G346200.1 Wheat nucleus 64.08 63.16
TraesCS2D01G344900.1 Wheat nucleus 64.08 63.16
TraesCS2B01G364700.1 Wheat nucleus, plastid 62.14 62.44
Os04t0487300-01 Rice nucleus 50.49 62.28
CDX70895 Canola nucleus 58.25 57.69
Bra006521.1-P Field mustard nucleus 55.34 57.29
CDX88871 Canola nucleus 58.25 56.6
AT3G16680.1 Thale cress golgi 23.3 55.17
TraesCS2A01G346100.2 Wheat nucleus 53.4 53.92
TraesCS2D01G344800.1 Wheat mitochondrion, nucleus 52.91 53.43
HORVU2Hr1G084270.1 Barley nucleus 52.43 52.94
TraesCS2B01G364500.1 Wheat nucleus 51.46 51.96
HORVU1Hr1G048500.1 Barley endoplasmic reticulum 12.14 51.02
HORVU6Hr1G071230.1 Barley cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole 24.27 50.0
HORVU1Hr1G052270.3 Barley cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 25.24 46.43
HORVU7Hr1G020400.1 Barley cytosol, mitochondrion, nucleus, plastid 25.24 46.43
HORVU2Hr1G084300.6 Barley nucleus, plastid 62.14 46.38
HORVU4Hr1G028860.1 Barley cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole 24.76 45.54
HORVU2Hr1G026650.1 Barley cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole 24.27 44.64
HORVU6Hr1G011700.1 Barley endoplasmic reticulum, nucleus 32.52 36.81
VIT_08s0007g05540.t01 Wine grape nucleus 36.41 32.75
VIT_13s0139g00310.t01 Wine grape nucleus 33.01 30.77
Protein Annotations
EntrezGene:100259318wikigene:100259318MapMan:15.1.6.3Gene3D:3.40.1340.10Gene3D:3.90.940.20ProteinID:CCB51504
ProteinID:CCB51504.1InterPro:DNA_RNA_pol_RPB5_euk/virusUniProt:F6HH08EMBL:FN595756GO:GO:0001054GO:GO:0001055
GO:GO:0001056GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003824GO:GO:0003899
GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005654
GO:GO:0005665GO:GO:0005666GO:GO:0005730GO:GO:0005736GO:GO:0006139GO:GO:0006351
GO:GO:0006360GO:GO:0006366GO:GO:0006383GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009987GO:GO:0016740InterPro:IPR035913InterPro:IPR036710EntrezGene:LOC100259318wikigene:LOC100259318
HAMAP:MF_00025PFAM:PD005155PFAM:PF01191PFAM:PF03871PIRSF:PIRSF000747ScanProsite:PS01110
PANTHER:PTHR10535InterPro:RNA_pol_Rpb5_NInterPro:RNA_pol_Rpb5_N_sfInterPro:RNA_pol_subH/Rpb5_CInterPro:RNA_pol_subH/Rpb5_CSInterPro:RPB5-like
InterPro:RpoH/RPB5SUPFAM:SSF53036SUPFAM:SSF55287TIGR:TC52965UniParc:UPI00015C9205ArrayExpress:VIT_11s0016g03530
EnsemblPlantsGene:VIT_11s0016g03530EnsemblPlants:VIT_11s0016g03530.t01RefSeq:XP_002284107RefSeq:XP_002284107.1RefSeq:XP_002284110RefSeq:XP_002284110.1
Description
No Description!
Coordinates
chr11:-:2875512..2879845
Molecular Weight (calculated)
24266.6 Da
IEP (calculated)
10.002
GRAVY (calculated)
-0.428
Length
206 amino acids
Sequence
(BLAST)
001: MSASEEEISR LFRIRKTVMQ MLKDRGYFVG DFEINMTKHQ FVSKFGENMK REDLVINKAK RTDSSDQIYV FFPEEQKVGV KTMKTYTNRM KSENVFRAIL
101: VVQQNLTPFA RTCINEISTK FHLEVFQEAE LLVNIKEHVL VPEHQVLTSE EKKTLLERYT VKETQLPRIQ VSDPIARYFG LKRGQVVKII RPSETAGRYI
201: TYRYVV
Best Arabidopsis Sequence Match ( AT3G22320.1 )
(BLAST)
001: MLTEEELKRL YRIQKTLMQM LRDRGYFIAD SELTMTKQQF IRKHGDNMKR EDLVTLKAKR NDNSDQLYIF FPDEAKVGVK TMKMYTNRMK SENVFRAILV
101: VQQNLTPFAR TCISEISSKF HLEVFQEAEM LVNIKEHVLV PEHQVLTTEE KKTLLERYTV KETQLPRIQV TDPIARYFGL KRGQVVKIIR PSETAGRYVT
201: YRYVV
Arabidopsis Description
NRPB5ADNA-directed RNA polymerases II and IV subunit 5A [Source:UniProtKB/Swiss-Prot;Acc:O81098]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.