Factsheet for TraesCS2B01G364600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G417300.1
TraesCS3B01G452200.1
TraesCS3D01G412800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22320.1	TraesCS3A01G417300.1	AT3G24650.1	10743655
AT3G22320.1	TraesCS3B01G452200.1	AT3G24650.1	10743655
AT3G22320.1	TraesCS3D01G412800.1	AT3G24650.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G344900.1	Wheat	nucleus	99.52	99.52
TraesCS2A01G346200.1	Wheat	nucleus	99.04	99.04
TraesCS2B01G364700.1	Wheat	nucleus, plastid	86.12	87.8
Zm00001d003242_P001	Maize	mitochondrion	69.38	70.39
HORVU1Hr1G048500.1	Barley	endoplasmic reticulum	16.27	69.39
KXG26596	Sorghum	nucleus	67.94	68.93
Os04t0487300-01	Rice	nucleus	54.55	68.26
HORVU6Hr1G071230.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	32.54	68.0
GSMUA_AchrUn_...	Banana	nucleus	66.99	67.63
VIT_11s0016g03530.t01	Wine grape	nucleus	63.64	64.56
Solyc05g051790.2.1	Tomato	nucleus	57.89	64.36
Solyc03g025570.2.1	Tomato	cytosol	35.89	64.1
PGSC0003DMT400051454	Potato	nucleus	63.16	64.08
PGSC0003DMT400077392	Potato	nucleus	62.68	63.59
KRH48354	Soybean	nucleus	62.2	63.11
KRH39324	Soybean	nucleus	61.72	62.62
HORVU7Hr1G020400.1	Barley	cytosol, mitochondrion, nucleus, plastid	33.49	62.5
HORVU1Hr1G052270.3	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	33.49	62.5
Bra031350.1-P	Field mustard	nucleus	60.29	61.16
CDY10635	Canola	nucleus	60.29	61.16
HORVU4Hr1G028860.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	32.54	60.71
Bra001864.1-P	Field mustard	nucleus	59.81	60.68
CDY37407	Canola	nucleus	59.81	60.68
CDY35542	Canola	nucleus	59.81	60.68
CDY24303	Canola	nucleus	59.81	60.68
CDX92939	Canola	nucleus	59.81	60.68
AT3G22320.1	Thale cress	nucleus	59.33	60.49
TraesCS2B01G364500.1	Wheat	nucleus	58.85	60.29
TraesCS3B01G363400.1	Wheat	nucleus	60.29	60.0
HORVU2Hr1G026650.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	32.06	59.82
Solyc05g053510.1.1	Tomato	nucleus	55.5	56.04
HORVU6Hr1G011700.1	Barley	endoplasmic reticulum, nucleus	48.33	55.49
Bra006521.1-P	Field mustard	nucleus	50.72	53.27
PGSC0003DMT400069997	Potato	nucleus	52.63	53.14
CDX88871	Canola	nucleus	50.72	50.0
CDX70895	Canola	nucleus	49.28	49.52
AT5G57980.1	Thale cress	nucleus	44.98	44.76
CDY11839	Canola	nucleus	44.02	43.81
AT3G16680.1	Thale cress	golgi	18.18	43.68
CDX88650	Canola	nucleus	43.06	42.86
Bra006791.1-P	Field mustard	nucleus	43.06	42.86
TraesCS5B01G132800.1	Wheat	nucleus	33.49	30.97
TraesCS4B01G133200.1	Wheat	nucleus	34.45	28.57

Protein Annotations

MapMan:15.1.6.3	Gene3D:3.40.1340.10	Gene3D:3.90.940.20	InterPro:DNA_RNA_pol_RPB5_euk/virus	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	InterPro:IPR035913	InterPro:IPR036710	HAMAP:MF_00025
PFAM:PD005155	PFAM:PF01191	PFAM:PF03871	PIRSF:PIRSF000747	PANTHER:PTHR10535	InterPro:RNA_pol_Rpb5_N
InterPro:RNA_pol_Rpb5_N_sf	InterPro:RNA_pol_subH/Rpb5_C	InterPro:RPB5-like	InterPro:RpoH/RPB5	SUPFAM:SSF53036	SUPFAM:SSF55287
EnsemblPlantsGene:TraesCS2B01G364600	EnsemblPlants:TraesCS2B01G364600.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2B:-:518751369..518753700

Molecular Weight (calculated)

24114.5 Da

IEP (calculated)

9.913

GRAVY (calculated)

-0.472

Length

209 amino acids

Sequence
(BLAST)

001: MAAAEGEASR LFRVRRTVMQ MLRDRGYLVV DADVDMTMGE FVGRYGDPVR RDDLVINRAK KDKPDEQIYV FFPNEPKPGM KTVKSYAEKM KQENVNNGIL
101: VVQQALTAFA RNAVLGLSQE KEKLMLEVFQ EGELLINIKN HDLVPEHVLL TKEQKKTLLE KYTVKETQLP RIQITDPIAR YYGMRRGQVV KITRPSETAG
201: KYVTYRYVV

Best Arabidopsis Sequence Match ( AT3G22320.1 )
(BLAST)

001: MLTEEELKRL YRIQKTLMQM LRDRGYFIAD SELTMTKQQF IRKHGDNMKR EDLVTLKAKR NDNSDQLYIF FPDEAKVGVK TMKMYTNRMK SENVFRAILV
101: VQQNLTPFAR TCISEISSKF HLEVFQEAEM LVNIKEHVLV PEHQVLTTEE KKTLLERYTV KETQLPRIQV TDPIARYFGL KRGQVVKIIR PSETAGRYVT
201: YRYVV

Arabidopsis Description

NRPB5ADNA-directed RNA polymerases II and IV subunit 5A [Source:UniProtKB/Swiss-Prot;Acc:O81098]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.