CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006791.1-P	Field mustard	nucleus	100.0	100.0
CDY11839	Canola	nucleus	98.1	98.1
AT5G57980.1	Thale cress	nucleus	81.9	81.9
GSMUA_Achr2P00920_001	Banana	nucleus	45.24	46.57
KXG33574	Sorghum	nucleus	46.19	46.19
CDY10635	Canola	nucleus	44.76	45.63
CDY37407	Canola	nucleus	44.29	45.15
GSMUA_AchrUn_...	Banana	nucleus	44.29	44.93
TraesCS2D01G345000.2	Wheat	nucleus	43.81	44.88
CDX92939	Canola	nucleus	43.81	44.66
CDY24303	Canola	nucleus	43.81	44.66
CDY35542	Canola	nucleus	43.81	44.66
Zm00001d003242_P001	Maize	mitochondrion	43.81	44.66
TraesCS2B01G364700.1	Wheat	nucleus, plastid	43.33	44.39
TraesCS3A01G333200.2	Wheat	nucleus	44.29	44.29
Zm00001d012557_P001	Maize	extracellular	44.29	44.29
TraesCS3B01G363400.1	Wheat	nucleus	44.29	44.29
TraesCS3D01G326800.2	Wheat	nucleus	44.29	44.29
HORVU3Hr1G078930.1	Barley	nucleus	44.29	44.29
KXG26596	Sorghum	nucleus	43.33	44.17
TraesCS2A01G346300.1	Wheat	nucleus	42.86	43.9
Os01t0805800-01	Rice	nucleus	43.81	43.81
TraesCS2D01G344900.1	Wheat	nucleus	42.86	43.06
TraesCS2B01G364600.1	Wheat	nucleus, plastid	42.86	43.06
HORVU2Hr1G084270.1	Barley	nucleus	41.43	42.65
TraesCS2A01G346100.2	Wheat	nucleus	41.43	42.65
TraesCS2A01G346200.1	Wheat	nucleus	42.38	42.58
TraesCS2D01G344800.1	Wheat	mitochondrion, nucleus	40.48	41.67
Os04t0487300-01	Rice	nucleus	32.86	41.32
TraesCS2B01G364500.1	Wheat	nucleus	40.0	41.18
CDX70895	Canola	nucleus	39.05	39.42
CDX88871	Canola	nucleus	39.05	38.68
HORVU1Hr1G048500.1	Barley	endoplasmic reticulum	8.1	34.69
HORVU6Hr1G071230.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	16.19	34.0
HORVU2Hr1G084300.6	Barley	nucleus, plastid	44.29	33.7
HORVU4Hr1G028860.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	17.14	32.14
HORVU1Hr1G052270.3	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	17.14	32.14
HORVU7Hr1G020400.1	Barley	cytosol, mitochondrion, nucleus, plastid	16.67	31.25
HORVU2Hr1G026650.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	16.19	30.36
CDY14763	Canola	nucleus	31.43	29.6
CDY06931	Canola	nucleus	30.48	28.7
CDY06137	Canola	nucleus	30.48	27.71
CDX72073	Canola	nucleus	30.0	27.39
CDY13211	Canola	nucleus	28.57	24.39
CDX76143	Canola	cytosol	28.57	23.9
HORVU6Hr1G011700.1	Barley	endoplasmic reticulum, nucleus	20.48	23.63

Protein Annotations

MapMan:15.1.6.3	Gene3D:3.40.1340.10	Gene3D:3.90.940.20	GO:A0A078DHI6	EnsemblPlants:CDX88650	ProteinID:CDX88650
ProteinID:CDX88650.1	InterPro:DNA_RNA_pol_RPB5_euk/virus	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00148693001	InterPro:IPR035913	InterPro:IPR036710	PFAM:PD005155	PFAM:PF01191
PFAM:PF03871	PIRSF:PIRSF000747	PANTHER:PTHR10535	InterPro:RNA_pol_Rpb5_N	InterPro:RNA_pol_Rpb5_N_sf	InterPro:RNA_pol_subH/Rpb5_C
InterPro:RPB5-like	SUPFAM:SSF53036	SUPFAM:SSF55287	UniParc:UPI0002540384	SEG:seg	:

Description

BnaA03g09990D

Coordinates

chrLK031856:-:343222..343926

Molecular Weight (calculated)

24312.6 Da

IEP (calculated)

9.296

GRAVY (calculated)

-0.410

Length

210 amino acids

Sequence
(BLAST)

001: MSEGEDEITR VFKVRRTVLQ MLKDRGYNIE ESDIELKRED FVQNFCKAMN KVNKEALFVT ADKGPNPEDK IYVFYPEGPK VGVPIIKKDV VMKMRDDKVT
101: RGIIVVPQPI TGAAKNAIIE LNKILTIEVF EEAELVTNIT EHKLINKYYV LDNQAKKELL QKYTVQDTQL PRILVSDPVA RYYGLKRGQV VKIRRTDATS
201: LDYYTYRYAV

Best Arabidopsis Sequence Match ( AT5G57980.1 )
(BLAST)

001: MSDMDDEITR IFKVRRTVLQ MLRDRGYTIE ESDLNLKREE FVQRFCKTMN KVNKEALFVS ANKGPNPADK IYVFYPEGPK VGVPVIKKEV AIKMRDDKVH
101: RGIVVVPMAI TAPARMAVSE LNKMLTIEVF EEAELVTNIT EHKLVNKYYV LDDQAKKKLL NTYTVQDTQL PRILVTDPLA RYYGLKRGQV VKIRRSDATS
201: LDYYTYRFAV

Arabidopsis Description

NRPB5L1DNA-directed RNA polymerase subunit 5-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJL8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.