Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G092690.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G22320.1 | HORVU3Hr1G092690.2 | AT3G24650.1 | 10743655 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G346300.1 | Wheat | nucleus | 64.86 | 87.32 |
| TraesCS2D01G345000.2 | Wheat | nucleus | 64.49 | 86.83 |
| TraesCS2B01G364700.1 | Wheat | nucleus, plastid | 64.13 | 86.34 |
| HORVU1Hr1G048500.1 | Barley | endoplasmic reticulum | 12.68 | 71.43 |
| HORVU6Hr1G071230.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 24.28 | 67.0 |
| GSMUA_AchrUn_... | Banana | nucleus | 50.0 | 66.67 |
| Zm00001d003242_P001 | Maize | mitochondrion | 49.28 | 66.02 |
| Os04t0487300-01 | Rice | nucleus | 39.86 | 65.87 |
| KXG26596 | Sorghum | nucleus | 48.55 | 65.05 |
| KRH48354 | Soybean | nucleus | 46.74 | 62.62 |
| HORVU1Hr1G052270.3 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 25.36 | 62.5 |
| KRH39324 | Soybean | nucleus | 46.38 | 62.14 |
| VIT_11s0016g03530.t01 | Wine grape | nucleus | 46.38 | 62.14 |
| Solyc05g051790.2.1 | Tomato | nucleus | 41.67 | 61.17 |
| PGSC0003DMT400051454 | Potato | nucleus | 45.65 | 61.16 |
| HORVU7Hr1G020400.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 24.64 | 60.71 |
| PGSC0003DMT400077392 | Potato | nucleus | 45.29 | 60.68 |
| HORVU4Hr1G028860.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 24.28 | 59.82 |
| Solyc03g025570.2.1 | Tomato | cytosol | 25.0 | 58.97 |
| HORVU2Hr1G026650.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 23.91 | 58.93 |
| HORVU2Hr1G084270.1 | Barley | nucleus | 43.48 | 58.82 |
| Bra031350.1-P | Field mustard | nucleus | 43.84 | 58.74 |
| CDY10635 | Canola | nucleus | 43.84 | 58.74 |
| HORVU3Hr1G078930.1 | Barley | nucleus | 44.57 | 58.57 |
| Bra001864.1-P | Field mustard | nucleus | 43.48 | 58.25 |
| CDX92939 | Canola | nucleus | 43.48 | 58.25 |
| CDY37407 | Canola | nucleus | 43.48 | 58.25 |
| CDY35542 | Canola | nucleus | 43.48 | 58.25 |
| CDY24303 | Canola | nucleus | 43.48 | 58.25 |
| AT3G22320.1 | Thale cress | nucleus | 43.12 | 58.05 |
| Solyc05g053510.1.1 | Tomato | nucleus | 40.22 | 53.62 |
| HORVU6Hr1G011700.1 | Barley | endoplasmic reticulum, nucleus | 35.14 | 53.3 |
| PGSC0003DMT400069997 | Potato | nucleus | 39.13 | 52.17 |
| Bra006521.1-P | Field mustard | nucleus | 35.51 | 49.25 |
| CDX88871 | Canola | nucleus | 36.96 | 48.11 |
| CDX70895 | Canola | nucleus | 35.87 | 47.6 |
| CDY11839 | Canola | nucleus | 34.06 | 44.76 |
| CDX88650 | Canola | nucleus | 33.7 | 44.29 |
| Bra006791.1-P | Field mustard | nucleus | 33.7 | 44.29 |
| AT5G57980.1 | Thale cress | nucleus | 33.33 | 43.81 |
| AT3G16680.1 | Thale cress | golgi | 13.04 | 41.38 |
| HORVU5Hr1G043080.6 | Barley | nucleus | 25.72 | 31.14 |
| HORVU0Hr1G038750.1 | Barley | nucleus | 27.17 | 27.78 |
Protein Annotations
| MapMan:15.1.6.3 | Gene3D:3.40.1340.10 | Gene3D:3.90.940.20 | UniProt:A0A287IPZ3 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | EnsemblPlantsGene:HORVU2Hr1G084300 | EnsemblPlants:HORVU2Hr1G084300.6 | InterPro:IPR035913 |
| InterPro:IPR036710 | HAMAP:MF_00025 | PFAM:PD005155 | PFAM:PF01191 | PFAM:PF03871 | PANTHER:PTHR10535 |
| InterPro:RNA_pol_Rpb5_N | InterPro:RNA_pol_Rpb5_N_sf | InterPro:RNA_pol_subH/Rpb5_C | InterPro:RPB5-like | InterPro:RpoH/RPB5 | SUPFAM:SSF53036 |
| SUPFAM:SSF55287 | UniParc:UPI000B47DBAD | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr2H:-:610812848..610815184
Molecular Weight (calculated)
31297.9 Da
IEP (calculated)
10.492
GRAVY (calculated)
-0.589
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: PAHLARFGTA QQRSHNSVSG SGSDPPFRNP RYLLGAGVSS PQKAKTPPPV RCRRRLLLGR QATRAVGEGM AEAEGETSRL FRVRRTVMQM LRDRGYLVVD
101: ADVDMTMGEF VGRYGDPVRR DDLVINRAKK DNPDEQIYVF FPNEPKPGQK AVKSYVEKMT QENVRNGILV VQQALTSFAR NNLLGNSPDK LQVQVFQEKE
201: LLINIKNHDL VPEHVLLTKE QKKTLLEKYT VKETQLPRIQ VADPVARYYG MMRGQVVKIT RPSETAGKYV TYRYVV
101: ADVDMTMGEF VGRYGDPVRR DDLVINRAKK DNPDEQIYVF FPNEPKPGQK AVKSYVEKMT QENVRNGILV VQQALTSFAR NNLLGNSPDK LQVQVFQEKE
201: LLINIKNHDL VPEHVLLTKE QKKTLLEKYT VKETQLPRIQ VADPVARYYG MMRGQVVKIT RPSETAGKYV TYRYVV
001: MLTEEELKRL YRIQKTLMQM LRDRGYFIAD SELTMTKQQF IRKHGDNMKR EDLVTLKAKR NDNSDQLYIF FPDEAKVGVK TMKMYTNRMK SENVFRAILV
101: VQQNLTPFAR TCISEISSKF HLEVFQEAEM LVNIKEHVLV PEHQVLTTEE KKTLLERYTV KETQLPRIQV TDPIARYFGL KRGQVVKIIR PSETAGRYVT
201: YRYVV
101: VQQNLTPFAR TCISEISSKF HLEVFQEAEM LVNIKEHVLV PEHQVLTTEE KKTLLERYTV KETQLPRIQV TDPIARYFGL KRGQVVKIIR PSETAGRYVT
201: YRYVV
Arabidopsis Description
NRPB5ADNA-directed RNA polymerases II and IV subunit 5A [Source:UniProtKB/Swiss-Prot;Acc:O81098]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.