Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- nucleus 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G048500.1 | Barley | endoplasmic reticulum | 22.99 | 40.82 |
| HORVU6Hr1G071230.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 36.78 | 32.0 |
| Solyc03g025570.2.1 | Tomato | cytosol | 37.93 | 28.21 |
| HORVU7Hr1G020400.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 35.63 | 27.68 |
| HORVU4Hr1G028860.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 35.63 | 27.68 |
| HORVU1Hr1G052270.3 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 35.63 | 27.68 |
| HORVU2Hr1G026650.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 34.48 | 26.79 |
| Os04t0487300-01 | Rice | nucleus | 48.28 | 25.15 |
| AT3G22320.1 | Thale cress | nucleus | 55.17 | 23.41 |
| VIT_11s0016g03530.t01 | Wine grape | nucleus | 55.17 | 23.3 |
| GSMUA_AchrUn_... | Banana | nucleus | 52.87 | 22.22 |
| Zm00001d003242_P001 | Maize | mitochondrion | 50.57 | 21.36 |
| Solyc05g051790.2.1 | Tomato | nucleus | 45.98 | 21.28 |
| Bra006521.1-P | Field mustard | nucleus | 47.13 | 20.6 |
| GSMUA_Achr2P00920_001 | Banana | nucleus | 48.28 | 20.59 |
| KXG26596 | Sorghum | nucleus | 48.28 | 20.39 |
| KRH48354 | Soybean | nucleus | 48.28 | 20.39 |
| KRH39324 | Soybean | nucleus | 48.28 | 20.39 |
| Os01t0805800-01 | Rice | nucleus | 48.28 | 20.0 |
| KXG33574 | Sorghum | nucleus | 47.13 | 19.52 |
| PGSC0003DMT400051454 | Potato | nucleus | 45.98 | 19.42 |
| HORVU6Hr1G011700.1 | Barley | endoplasmic reticulum, nucleus | 40.23 | 19.23 |
| Zm00001d012557_P001 | Maize | extracellular | 45.98 | 19.05 |
| PGSC0003DMT400077392 | Potato | nucleus | 44.83 | 18.93 |
| CDX88871 | Canola | nucleus | 45.98 | 18.87 |
| CDX70895 | Canola | nucleus | 44.83 | 18.75 |
| HORVU3Hr1G078930.1 | Barley | nucleus | 44.83 | 18.57 |
| TraesCS3D01G326800.2 | Wheat | nucleus | 44.83 | 18.57 |
| TraesCS3B01G363400.1 | Wheat | nucleus | 44.83 | 18.57 |
| TraesCS3A01G333200.2 | Wheat | nucleus | 44.83 | 18.57 |
| TraesCS2D01G345000.2 | Wheat | nucleus | 43.68 | 18.54 |
| TraesCS2A01G346200.1 | Wheat | nucleus | 43.68 | 18.18 |
| TraesCS2B01G364600.1 | Wheat | nucleus, plastid | 43.68 | 18.18 |
| TraesCS2D01G344900.1 | Wheat | nucleus | 43.68 | 18.18 |
| TraesCS2A01G346300.1 | Wheat | nucleus | 42.53 | 18.05 |
| Solyc05g053510.1.1 | Tomato | nucleus | 42.53 | 17.87 |
| TraesCS2B01G364700.1 | Wheat | nucleus, plastid | 41.38 | 17.56 |
| PGSC0003DMT400069997 | Potato | nucleus | 41.38 | 17.39 |
| TraesCS2D01G344800.1 | Wheat | mitochondrion, nucleus | 35.63 | 15.2 |
| TraesCS2B01G364500.1 | Wheat | nucleus | 35.63 | 15.2 |
| TraesCS2A01G346100.2 | Wheat | nucleus | 34.48 | 14.71 |
| HORVU2Hr1G084270.1 | Barley | nucleus | 34.48 | 14.71 |
| AT5G57980.1 | Thale cress | nucleus | 32.18 | 13.33 |
| HORVU2Hr1G084300.6 | Barley | nucleus, plastid | 41.38 | 13.04 |
| AT2G41340.1 | Thale cress | nucleus | 28.74 | 11.47 |
| AT3G57080.1 | Thale cress | nucleus | 26.44 | 10.36 |
| AT3G54490.1 | Thale cress | nucleus | 25.29 | 9.44 |
Protein Annotations
| Gene3D:3.40.1340.10 | Gene3D:3.90.940.20 | MapMan:35.2 | EntrezGene:820920 | ProteinID:AEE75851.1 | ArrayExpress:AT3G16680 |
| EnsemblPlantsGene:AT3G16680 | RefSeq:AT3G16680 | TAIR:AT3G16680 | RefSeq:AT3G16680-TAIR-G | EnsemblPlants:AT3G16680.1 | TAIR:AT3G16680.1 |
| Unigene:At.53338 | UniProt:F4J2R9 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 |
| GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016740 | InterPro:IPR035913 | InterPro:IPR036710 | RefSeq:NP_188290.1 | PFAM:PD005155 | PFAM:PF01191 |
| PO:PO:0009005 | PANTHER:PTHR10535 | InterPro:RNA_pol_Rpb5_N_sf | InterPro:RNA_pol_subH/Rpb5_C | InterPro:RPB5-like | SUPFAM:SSF53036 |
| SUPFAM:SSF55287 | UniParc:UPI0000163400 | : | : | : | : |
Description
DNA binding / DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4J2R9]
Coordinates
chr3:+:5683336..5684278
Molecular Weight (calculated)
10241.5 Da
IEP (calculated)
9.975
GRAVY (calculated)
-0.086
Length
87 amino acids
Sequence
(BLAST)
(BLAST)
1: MKKYIDQLKS ANVFRAILVV QDIKAFSRQA LVFLGAVYPI FHIEVFQEKE LIVNVKEHVF VPEHQALTTE EKQKFLERKR TSFQGFT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.