CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES04085
OQU89229

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22320.1	EES04085	AT3G24650.1	10743655
AT3G22320.1	OQU89229	AT3G24650.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012557_P001	Maize	extracellular	96.19	96.19
Os01t0805800-01	Rice	nucleus	91.43	91.43
TraesCS3D01G326800.2	Wheat	nucleus	85.71	85.71
TraesCS3B01G363400.1	Wheat	nucleus	85.71	85.71
TraesCS3A01G333200.2	Wheat	nucleus	85.71	85.71
HORVU3Hr1G078930.1	Barley	nucleus	85.24	85.24
GSMUA_Achr2P00920_001	Banana	nucleus	78.1	80.39
Solyc03g025570.2.1	Tomato	cytosol	39.52	70.94
KRH48354	Soybean	nucleus	67.62	68.93
VIT_11s0016g03530.t01	Wine grape	nucleus	67.62	68.93
KRH39324	Soybean	nucleus	67.14	68.45
Solyc05g051790.2.1	Tomato	nucleus	60.95	68.09
AT3G22320.1	Thale cress	nucleus	65.24	66.83
CDX92939	Canola	nucleus	64.76	66.02
Bra001864.1-P	Field mustard	nucleus	64.76	66.02
CDY24303	Canola	nucleus	64.76	66.02
CDY35542	Canola	nucleus	64.76	66.02
PGSC0003DMT400051454	Potato	nucleus	63.81	65.05
Bra031350.1-P	Field mustard	nucleus	62.38	63.59
PGSC0003DMT400077392	Potato	nucleus	62.38	63.59
CDY37407	Canola	nucleus	62.38	63.59
CDY10635	Canola	nucleus	62.38	63.59
KXG26596	Sorghum	nucleus	60.0	61.16
Solyc05g053510.1.1	Tomato	nucleus	58.57	59.42
PGSC0003DMT400069997	Potato	nucleus	57.62	58.45
Bra006521.1-P	Field mustard	nucleus	50.0	52.76
CDX88871	Canola	nucleus	50.0	49.53
CDX70895	Canola	nucleus	48.57	49.04
AT3G16680.1	Thale cress	golgi	19.52	47.13
CDX88650	Canola	nucleus	46.19	46.19
Bra006791.1-P	Field mustard	nucleus	46.19	46.19
CDY11839	Canola	nucleus	46.19	46.19
AT5G57980.1	Thale cress	nucleus	43.81	43.81
KXG22818	Sorghum	mitochondrion	18.57	35.45
EES09238	Sorghum	nucleus	38.1	30.42

Protein Annotations

MapMan:15.1.6.3	Gene3D:3.40.1340.10	Gene3D:3.90.940.20	UniProt:A0A1B6Q6M6	InterPro:DNA_RNA_pol_RPB5_euk/virus	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	InterPro:IPR035913	InterPro:IPR036710
EnsemblPlants:KXG33574	ProteinID:KXG33574	ProteinID:KXG33574.1	HAMAP:MF_00025	PFAM:PD005155	PFAM:PF01191
PFAM:PF03871	PIRSF:PIRSF000747	ScanProsite:PS01110	PANTHER:PTHR10535	InterPro:RNA_pol_Rpb5_N	InterPro:RNA_pol_Rpb5_N_sf
InterPro:RNA_pol_subH/Rpb5_C	InterPro:RNA_pol_subH/Rpb5_CS	InterPro:RPB5-like	InterPro:RpoH/RPB5	EnsemblPlantsGene:SORBI_3003G328700	SUPFAM:SSF53036
SUPFAM:SSF55287	UniParc:UPI0001C80A52	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:65406284..65408590

Molecular Weight (calculated)

24795.2 Da

IEP (calculated)

9.839

GRAVY (calculated)

-0.458

Length

210 amino acids

Sequence
(BLAST)

001: MSAGLVTDEA TVGRLYRIRR TVMQMLRDRG YLVVEHELAT SRRDFLRKFG ESFHREDLQI NKSKKNDPSD QIYVFFPNDD KVGMKHIKKY VEMMTHENVS
101: RAMVVLQQNL TPFAKSFLIE LEPKIHLEVF QEAELLINIK EHVLVPEHQV LTNEEKKTLL ERYTLKETQL PRIQISDPIA RYYGLRRGQV VKIIRPSETA
201: GRYVTYRYVV

Best Arabidopsis Sequence Match ( AT3G22320.1 )
(BLAST)

001: MLTEEELKRL YRIQKTLMQM LRDRGYFIAD SELTMTKQQF IRKHGDNMKR EDLVTLKAKR NDNSDQLYIF FPDEAKVGVK TMKMYTNRMK SENVFRAILV
101: VQQNLTPFAR TCISEISSKF HLEVFQEAEM LVNIKEHVLV PEHQVLTTEE KKTLLERYTV KETQLPRIQV TDPIARYFGL KRGQVVKIIR PSETAGRYVT
201: YRYVV

Arabidopsis Description

NRPB5ADNA-directed RNA polymerases II and IV subunit 5A [Source:UniProtKB/Swiss-Prot;Acc:O81098]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.