Factsheet for Solyc03g025570.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g083590.2.1
Solyc06g083600.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22320.1	Solyc06g083590.2.1	AT3G24650.1	10743655
AT3G22320.1	Solyc06g083600.1.1	AT3G24650.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g051790.2.1	Tomato	nucleus	88.03	54.79
PGSC0003DMT400051454	Potato	nucleus	88.89	50.49
AT3G22320.1	Thale cress	nucleus	82.91	47.32
Bra001864.1-P	Field mustard	nucleus	82.05	46.6
CDX92939	Canola	nucleus	82.05	46.6
CDY24303	Canola	nucleus	82.05	46.6
CDY35542	Canola	nucleus	82.05	46.6
VIT_11s0016g03530.t01	Wine grape	nucleus	80.34	45.63
Bra031350.1-P	Field mustard	nucleus	79.49	45.15
CDY37407	Canola	nucleus	79.49	45.15
HORVU1Hr1G048500.1	Barley	endoplasmic reticulum	18.8	44.9
CDY10635	Canola	nucleus	78.63	44.66
GSMUA_AchrUn_...	Banana	nucleus	77.78	43.96
KRH48354	Soybean	nucleus	76.07	43.2
KRH39324	Soybean	nucleus	76.07	43.2
GSMUA_Achr2P00920_001	Banana	nucleus	74.36	42.65
HORVU6Hr1G071230.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	35.9	42.0
Zm00001d012557_P001	Maize	extracellular	73.5	40.95
Os01t0805800-01	Rice	nucleus	73.5	40.95
TraesCS3A01G333200.2	Wheat	nucleus	72.65	40.48
HORVU3Hr1G078930.1	Barley	nucleus	72.65	40.48
TraesCS3B01G363400.1	Wheat	nucleus	72.65	40.48
TraesCS3D01G326800.2	Wheat	nucleus	72.65	40.48
Zm00001d003242_P001	Maize	mitochondrion	70.09	39.81
KXG33574	Sorghum	nucleus	70.94	39.52
HORVU7Hr1G020400.1	Barley	cytosol, mitochondrion, nucleus, plastid	37.61	39.29
Solyc05g053510.1.1	Tomato	nucleus	69.23	39.13
KXG26596	Sorghum	nucleus	68.38	38.84
HORVU1Hr1G052270.3	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	36.75	38.39
AT3G16680.1	Thale cress	golgi	28.21	37.93
HORVU4Hr1G028860.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	35.9	37.5
HORVU2Hr1G026650.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	35.04	36.61
TraesCS2A01G346300.1	Wheat	nucleus	63.25	36.1
TraesCS2A01G346200.1	Wheat	nucleus	64.1	35.89
TraesCS2B01G364600.1	Wheat	nucleus, plastid	64.1	35.89
TraesCS2D01G344900.1	Wheat	nucleus	64.1	35.89
TraesCS2D01G345000.2	Wheat	nucleus	62.39	35.61
TraesCS2B01G364700.1	Wheat	nucleus, plastid	62.39	35.61
HORVU2Hr1G084270.1	Barley	nucleus	57.27	32.84
TraesCS2A01G346100.2	Wheat	nucleus	56.41	32.35
TraesCS2B01G364500.1	Wheat	nucleus	56.41	32.35
TraesCS2D01G344800.1	Wheat	mitochondrion, nucleus	55.56	31.86
Bra006521.1-P	Field mustard	nucleus	52.99	31.16
CDX70895	Canola	nucleus	52.14	29.33
CDX88871	Canola	nucleus	52.14	28.77
Os04t0487300-01	Rice	nucleus	38.46	26.95
HORVU2Hr1G084300.6	Barley	nucleus, plastid	58.97	25.0
Solyc04g040170.2.1	Tomato	nucleus	40.17	20.7
Solyc01g098320.2.1	Tomato	nucleus	39.32	20.26
HORVU6Hr1G011700.1	Barley	endoplasmic reticulum, nucleus	29.91	19.23

Protein Annotations

MapMan:15.1.6.3	Gene3D:3.40.1340.10	Gene3D:3.90.940.20	GO:GO:0001054	GO:GO:0001055	GO:GO:0001056
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005665
GO:GO:0005666	GO:GO:0005730	GO:GO:0005736	GO:GO:0006139	GO:GO:0006351	GO:GO:0006360
GO:GO:0006366	GO:GO:0006383	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	InterPro:IPR035913	InterPro:IPR036710	UniProt:K4BF30	HAMAP:MF_00025	PFAM:PD005155
PFAM:PF01191	PANTHER:PTHR10535	InterPro:RNA_pol_Rpb5_N_sf	InterPro:RNA_pol_subH/Rpb5_C	InterPro:RPB5-like	InterPro:RpoH/RPB5
SUPFAM:SSF53036	SUPFAM:SSF55287	EnsemblPlantsGene:Solyc03g025570.2	EnsemblPlants:Solyc03g025570.2.1	UniParc:UPI0002768C9A	:

Description

No Description!

Coordinates

chr3:-:2964807..2966275

Molecular Weight (calculated)

13818.1 Da

IEP (calculated)

10.287

GRAVY (calculated)

-0.132

Length

117 amino acids

Sequence
(BLAST)

001: MKKEDVFQAV LIVQQNLTPF ARTCISEIST KFHLEVFQEA KMLVNIKKHV LIPEHQTFTL EEKKTLLERY TARFVFLPRI QITDPIARYY GLKRGQVVKI
101: IRPSETAGRY VTYRYVV

Best Arabidopsis Sequence Match ( AT3G22320.1 )
(BLAST)

001: MLTEEELKRL YRIQKTLMQM LRDRGYFIAD SELTMTKQQF IRKHGDNMKR EDLVTLKAKR NDNSDQLYIF FPDEAKVGVK TMKMYTNRMK SENVFRAILV
101: VQQNLTPFAR TCISEISSKF HLEVFQEAEM LVNIKEHVLV PEHQVLTTEE KKTLLERYTV KETQLPRIQV TDPIARYFGL KRGQVVKIIR PSETAGRYVT
201: YRYVV

Arabidopsis Description

NRPB5ADNA-directed RNA polymerases II and IV subunit 5A [Source:UniProtKB/Swiss-Prot;Acc:O81098]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.