Factsheet for AT3G22320.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35542	Canola	nucleus	94.15	93.69
CDY24303	Canola	nucleus	94.15	93.69
Bra001864.1-P	Field mustard	nucleus	94.15	93.69
CDX92939	Canola	nucleus	94.15	93.69
CDY37407	Canola	nucleus	90.73	90.29
Bra031350.1-P	Field mustard	nucleus	90.73	90.29
CDY10635	Canola	nucleus	89.76	89.32
VIT_11s0016g03530.t01	Wine grape	nucleus	83.41	83.01
Solyc03g025570.2.1	Tomato	cytosol	47.32	82.91
Solyc05g051790.2.1	Tomato	nucleus	73.66	80.32
PGSC0003DMT400051454	Potato	nucleus	79.02	78.64
KRH48354	Soybean	nucleus	78.54	78.16
PGSC0003DMT400077392	Potato	nucleus	78.05	77.67
KRH39324	Soybean	nucleus	78.05	77.67
GSMUA_AchrUn_...	Banana	nucleus	73.66	72.95
GSMUA_Achr2P00920_001	Banana	nucleus	68.78	69.12
Zm00001d012557_P001	Maize	extracellular	68.29	66.67
Os01t0805800-01	Rice	nucleus	67.8	66.19
KXG33574	Sorghum	nucleus	66.83	65.24
TraesCS3A01G333200.2	Wheat	nucleus	66.34	64.76
HORVU3Hr1G078930.1	Barley	nucleus	66.34	64.76
TraesCS3B01G363400.1	Wheat	nucleus	66.34	64.76
TraesCS3D01G326800.2	Wheat	nucleus	66.34	64.76
Solyc05g053510.1.1	Tomato	nucleus	64.39	63.77
PGSC0003DMT400069997	Potato	nucleus	63.41	62.8
Zm00001d003242_P001	Maize	mitochondrion	62.44	62.14
KXG26596	Sorghum	nucleus	61.46	61.16
TraesCS2D01G345000.2	Wheat	nucleus	60.0	60.0
TraesCS2A01G346300.1	Wheat	nucleus	60.0	60.0
TraesCS2D01G344900.1	Wheat	nucleus	60.49	59.33
TraesCS2B01G364600.1	Wheat	nucleus, plastid	60.49	59.33
TraesCS2A01G346200.1	Wheat	nucleus	60.0	58.85
TraesCS2B01G364700.1	Wheat	nucleus, plastid	58.54	58.54
Os04t0487300-01	Rice	nucleus	46.34	56.89
AT3G16680.1	Thale cress	golgi	23.41	55.17
TraesCS2D01G344800.1	Wheat	mitochondrion, nucleus	51.22	51.47
HORVU2Hr1G084270.1	Barley	nucleus	50.73	50.98
TraesCS2A01G346100.2	Wheat	nucleus	50.73	50.98
TraesCS2B01G364500.1	Wheat	nucleus	50.24	50.49
HORVU6Hr1G071230.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	23.9	49.0
HORVU1Hr1G048500.1	Barley	endoplasmic reticulum	11.71	48.98
HORVU1Hr1G052270.3	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	24.88	45.54
HORVU7Hr1G020400.1	Barley	cytosol, mitochondrion, nucleus, plastid	24.88	45.54
HORVU4Hr1G028860.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	24.39	44.64
HORVU2Hr1G026650.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	23.9	43.75
HORVU2Hr1G084300.6	Barley	nucleus, plastid	58.05	43.12
AT5G57980.1	Thale cress	nucleus	43.41	42.38
HORVU6Hr1G011700.1	Barley	endoplasmic reticulum, nucleus	33.66	37.91
AT3G57080.1	Thale cress	nucleus	35.12	32.43
AT2G41340.1	Thale cress	nucleus	34.15	32.11
AT3G54490.1	Thale cress	nucleus	31.22	27.47

Protein Annotations

MapMan:15.1.6.3	Gene3D:3.40.1340.10	Gene3D:3.90.940.20	EntrezGene:821801	UniProt:A0A178VI93	ProteinID:AEE76621.1
EMBL:AF019248	EMBL:AF370551	EMBL:AF412101	ArrayExpress:AT3G22320	EnsemblPlantsGene:AT3G22320	RefSeq:AT3G22320
TAIR:AT3G22320	RefSeq:AT3G22320-TAIR-G	EnsemblPlants:AT3G22320.1	TAIR:AT3G22320.1	Symbol:ATRPABC24.3	EMBL:AY086150
Unigene:At.6260	ProteinID:BAB01769.1	EMBL:BT002130	InterPro:DNA_RNA_pol_RPB5_euk/virus	GO:GO:0000418	GO:GO:0001054
GO:GO:0001055	GO:GO:0001056	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005665	GO:GO:0005666	GO:GO:0005730	GO:GO:0005736	GO:GO:0006139
GO:GO:0006351	GO:GO:0006360	GO:GO:0006366	GO:GO:0006383	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	InterPro:IPR035913	InterPro:IPR036710	HAMAP:MF_00025
RefSeq:NP_188871.1	UniProt:O81098	ProteinID:OAP06120.1	PFAM:PD005155	PFAM:PF01191	PFAM:PF03871
PIRSF:PIRSF000747	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PO:PO:0025195	PO:PO:0025281	ScanProsite:PS01110	PANTHER:PTHR10535	InterPro:RNA_pol_Rpb5_N	InterPro:RNA_pol_Rpb5_N_sf
InterPro:RNA_pol_subH/Rpb5_C	InterPro:RNA_pol_subH/Rpb5_CS	InterPro:RPB5-like	InterPro:RpoH/RPB5	SUPFAM:SSF53036	SUPFAM:SSF55287
UniParc:UPI00000AC3C5	:	:	:	:	:

Description

NRPB5ADNA-directed RNA polymerases II and IV subunit 5A [Source:UniProtKB/Swiss-Prot;Acc:O81098]

Coordinates

chr3:-:7890803..7892349

Molecular Weight (calculated)

24302.8 Da

IEP (calculated)

10.054

GRAVY (calculated)

-0.474

Length

205 amino acids

Sequence
(BLAST)

001: MLTEEELKRL YRIQKTLMQM LRDRGYFIAD SELTMTKQQF IRKHGDNMKR EDLVTLKAKR NDNSDQLYIF FPDEAKVGVK TMKMYTNRMK SENVFRAILV
101: VQQNLTPFAR TCISEISSKF HLEVFQEAEM LVNIKEHVLV PEHQVLTTEE KKTLLERYTV KETQLPRIQV TDPIARYFGL KRGQVVKIIR PSETAGRYVT
201: YRYVV

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.