Factsheet for Bra031350.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013248.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22320.1	Bra013248.1-P	AT3G24650.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10635	Canola	nucleus	98.54	98.54
CDY37407	Canola	nucleus	98.06	98.06
Bra001864.1-P	Field mustard	nucleus	95.15	95.15
AT3G22320.1	Thale cress	nucleus	90.29	90.73
VIT_11s0016g03530.t01	Wine grape	nucleus	82.52	82.52
Solyc03g025570.2.1	Tomato	cytosol	45.15	79.49
Solyc05g051790.2.1	Tomato	nucleus	71.84	78.72
KRH48354	Soybean	nucleus	77.18	77.18
KRH39324	Soybean	nucleus	77.18	77.18
PGSC0003DMT400051454	Potato	nucleus	76.7	76.7
PGSC0003DMT400077392	Potato	nucleus	75.73	75.73
GSMUA_AchrUn_...	Banana	nucleus	70.87	70.53
GSMUA_Achr2P00920_001	Banana	nucleus	66.5	67.16
Zm00001d012557_P001	Maize	extracellular	65.05	63.81
Os01t0805800-01	Rice	nucleus	65.05	63.81
HORVU3Hr1G078930.1	Barley	nucleus	63.59	62.38
TraesCS3D01G326800.2	Wheat	nucleus	63.59	62.38
TraesCS3B01G363400.1	Wheat	nucleus	63.59	62.38
TraesCS3A01G333200.2	Wheat	nucleus	63.59	62.38
KXG33574	Sorghum	nucleus	63.59	62.38
Solyc05g053510.1.1	Tomato	nucleus	61.65	61.35
Zm00001d003242_P001	Maize	mitochondrion	60.68	60.68
TraesCS2D01G345000.2	Wheat	nucleus	60.19	60.49
TraesCS2A01G346300.1	Wheat	nucleus	60.19	60.49
TraesCS2D01G344900.1	Wheat	nucleus	61.16	60.29
TraesCS2B01G364600.1	Wheat	nucleus, plastid	61.16	60.29
PGSC0003DMT400069997	Potato	nucleus	60.19	59.9
TraesCS2A01G346200.1	Wheat	nucleus	60.68	59.81
KXG26596	Sorghum	nucleus	59.22	59.22
TraesCS2B01G364700.1	Wheat	nucleus, plastid	58.74	59.02
Bra006521.1-P	Field mustard	nucleus	53.88	55.78
Os04t0487300-01	Rice	nucleus	44.66	55.09
HORVU1Hr1G048500.1	Barley	endoplasmic reticulum	12.62	53.06
TraesCS2A01G346100.2	Wheat	nucleus	51.46	51.96
TraesCS2D01G344800.1	Wheat	mitochondrion, nucleus	51.46	51.96
TraesCS2B01G364500.1	Wheat	nucleus	50.97	51.47
HORVU2Hr1G084270.1	Barley	nucleus	50.97	51.47
HORVU6Hr1G071230.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	24.76	51.0
HORVU1Hr1G052270.3	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	25.73	47.32
HORVU7Hr1G020400.1	Barley	cytosol, mitochondrion, nucleus, plastid	25.73	47.32
HORVU4Hr1G028860.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	25.24	46.43
HORVU2Hr1G026650.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	24.76	45.54
Bra006791.1-P	Field mustard	nucleus	45.63	44.76
HORVU2Hr1G084300.6	Barley	nucleus, plastid	58.74	43.84
HORVU6Hr1G011700.1	Barley	endoplasmic reticulum, nucleus	33.5	37.91
Bra007300.1-P	Field mustard	nucleus	35.92	32.03
Bra016940.1-P	Field mustard	nucleus	33.01	30.49
Bra014812.1-P	Field mustard	nucleus	31.07	27.23

Protein Annotations

MapMan:15.1.6.3	Gene3D:3.40.1340.10	Gene3D:3.90.940.20	EnsemblPlantsGene:Bra031350	EnsemblPlants:Bra031350.1	EnsemblPlants:Bra031350.1-P
InterPro:DNA_RNA_pol_RPB5_euk/virus	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
InterPro:IPR035913	InterPro:IPR036710	UniProt:M4ERC6	HAMAP:MF_00025	PFAM:PD005155	PFAM:PF01191
PFAM:PF03871	PIRSF:PIRSF000747	ScanProsite:PS01110	PANTHER:PTHR10535	InterPro:RNA_pol_Rpb5_N	InterPro:RNA_pol_Rpb5_N_sf
InterPro:RNA_pol_subH/Rpb5_C	InterPro:RNA_pol_subH/Rpb5_CS	InterPro:RPB5-like	InterPro:RpoH/RPB5	SUPFAM:SSF53036	SUPFAM:SSF55287
UniParc:UPI00025475FC	:	:	:	:	:

Description

AT3G22320 (E=5e-105) ATRPABC24.3, RPB5A, NRPB5, NRPD5 | NRPB5; DNA binding / DNA-directed RNA polymerase

Coordinates

chrA05:+:15833648..15834579

Molecular Weight (calculated)

24288.7 Da

IEP (calculated)

9.900

GRAVY (calculated)

-0.426

Length

206 amino acids

Sequence
(BLAST)

001: MGLTEEEIKR MYRIQKTLMQ MLKDRGYFIA DSEITMTLTQ FVRKYGDNMK REDLVTLRAK RNDSSDQLYV FFPDEVKVGV NTMKVYTNRM KSENVYRAIL
101: VVQQNLTPFA RNCISQISSK FHLEVFQEAE MLVNIKEHVL VPEHQVLTTE EKKTLLERYT VKETQLPRIQ VTDPIARYFG LKRGQVVKII RPSETAGRYV
201: TYRYAV

Best Arabidopsis Sequence Match ( AT3G22320.1 )
(BLAST)

001: MLTEEELKRL YRIQKTLMQM LRDRGYFIAD SELTMTKQQF IRKHGDNMKR EDLVTLKAKR NDNSDQLYIF FPDEAKVGVK TMKMYTNRMK SENVFRAILV
101: VQQNLTPFAR TCISEISSKF HLEVFQEAEM LVNIKEHVLV PEHQVLTTEE KKTLLERYTV KETQLPRIQV TDPIARYFGL KRGQVVKIIR PSETAGRYVT
201: YRYVV

Arabidopsis Description

NRPB5ADNA-directed RNA polymerases II and IV subunit 5A [Source:UniProtKB/Swiss-Prot;Acc:O81098]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.