Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88871 | Canola | nucleus | 95.98 | 90.09 |
| VIT_11s0016g03530.t01 | Wine grape | nucleus | 57.29 | 55.34 |
| Solyc05g051790.2.1 | Tomato | nucleus | 52.26 | 55.32 |
| Bra001864.1-P | Field mustard | nucleus | 56.28 | 54.37 |
| GSMUA_AchrUn_... | Banana | nucleus | 56.28 | 54.11 |
| Bra031350.1-P | Field mustard | nucleus | 55.78 | 53.88 |
| PGSC0003DMT400077392 | Potato | nucleus | 55.28 | 53.4 |
| PGSC0003DMT400051454 | Potato | nucleus | 55.28 | 53.4 |
| Solyc03g025570.2.1 | Tomato | cytosol | 31.16 | 52.99 |
| GSMUA_Achr2P00920_001 | Banana | nucleus | 54.27 | 52.94 |
| KRH48354 | Soybean | nucleus | 54.27 | 52.43 |
| KRH39324 | Soybean | nucleus | 53.77 | 51.94 |
| Os01t0805800-01 | Rice | nucleus | 54.77 | 51.9 |
| TraesCS3A01G333200.2 | Wheat | nucleus | 54.27 | 51.43 |
| TraesCS3B01G363400.1 | Wheat | nucleus | 54.27 | 51.43 |
| TraesCS3D01G326800.2 | Wheat | nucleus | 54.27 | 51.43 |
| HORVU3Hr1G078930.1 | Barley | nucleus | 54.27 | 51.43 |
| Zm00001d012557_P001 | Maize | extracellular | 53.77 | 50.95 |
| Solyc05g053510.1.1 | Tomato | nucleus | 52.76 | 50.72 |
| TraesCS2D01G344900.1 | Wheat | nucleus | 53.27 | 50.72 |
| TraesCS2B01G364600.1 | Wheat | nucleus, plastid | 53.27 | 50.72 |
| TraesCS2A01G346200.1 | Wheat | nucleus | 52.76 | 50.24 |
| KXG33574 | Sorghum | nucleus | 52.76 | 50.0 |
| Zm00001d003242_P001 | Maize | mitochondrion | 51.26 | 49.51 |
| TraesCS2A01G346300.1 | Wheat | nucleus | 50.25 | 48.78 |
| PGSC0003DMT400069997 | Potato | nucleus | 49.75 | 47.83 |
| TraesCS2D01G345000.2 | Wheat | nucleus | 49.25 | 47.8 |
| TraesCS2B01G364700.1 | Wheat | nucleus, plastid | 49.25 | 47.8 |
| KXG26596 | Sorghum | nucleus | 49.25 | 47.57 |
| AT3G16680.1 | Thale cress | golgi | 20.6 | 47.13 |
| TraesCS2D01G344800.1 | Wheat | mitochondrion, nucleus | 47.74 | 46.57 |
| HORVU2Hr1G084270.1 | Barley | nucleus | 47.24 | 46.08 |
| TraesCS2B01G364500.1 | Wheat | nucleus | 47.24 | 46.08 |
| TraesCS2A01G346100.2 | Wheat | nucleus | 46.73 | 45.59 |
| Os04t0487300-01 | Rice | nucleus | 34.17 | 40.72 |
| HORVU6Hr1G071230.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 19.6 | 39.0 |
| HORVU1Hr1G052270.3 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 21.11 | 37.5 |
| Bra006791.1-P | Field mustard | nucleus | 39.2 | 37.14 |
| HORVU7Hr1G020400.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 20.6 | 36.61 |
| HORVU4Hr1G028860.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 20.1 | 35.71 |
| HORVU2Hr1G084300.6 | Barley | nucleus, plastid | 49.25 | 35.51 |
| HORVU2Hr1G026650.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 19.1 | 33.93 |
| HORVU1Hr1G048500.1 | Barley | endoplasmic reticulum | 8.04 | 32.65 |
| Bra016940.1-P | Field mustard | nucleus | 33.17 | 29.6 |
| HORVU6Hr1G011700.1 | Barley | endoplasmic reticulum, nucleus | 25.63 | 28.02 |
| Bra007300.1-P | Field mustard | nucleus | 31.66 | 27.27 |
| Bra014812.1-P | Field mustard | nucleus | 29.65 | 25.11 |
Protein Annotations
| MapMan:15.1.6.3 | Gene3D:3.40.1340.10 | Gene3D:3.90.940.20 | EnsemblPlantsGene:Bra006521 | EnsemblPlants:Bra006521.1 | EnsemblPlants:Bra006521.1-P |
| InterPro:DNA_RNA_pol_RPB5_euk/virus | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 |
| InterPro:IPR035913 | InterPro:IPR036710 | UniProt:M4CQN2 | HAMAP:MF_00025 | PFAM:PD005155 | PFAM:PF01191 |
| PFAM:PF03871 | PIRSF:PIRSF000747 | PANTHER:PTHR10535 | InterPro:RNA_pol_Rpb5_N | InterPro:RNA_pol_Rpb5_N_sf | InterPro:RNA_pol_subH/Rpb5_C |
| InterPro:RPB5-like | InterPro:RpoH/RPB5 | SUPFAM:SSF53036 | SUPFAM:SSF55287 | UniParc:UPI000253FFBC | : |
Description
AT3G22320 (E=2e-064) ATRPABC24.3, RPB5A, NRPB5, NRPD5 | NRPB5; DNA binding / DNA-directed RNA polymerase
Coordinates
chrA03:+:3900187..3901102
Molecular Weight (calculated)
23464.7 Da
IEP (calculated)
9.570
GRAVY (calculated)
-0.347
Length
199 amino acids
Sequence
(BLAST)
(BLAST)
001: MLFRVNKTLN HMLKDRGYIV TDAELEMTQE QFIDQYGENM ERKDLVILKT KKNDESDKIF VFFLQETKVK MVGIKACFER MVAQNVFRAI LVVRKDMNRF
101: ALSAVTDANS KRILYLESFK ETELLMNVKE HAFVPEHIAL TTEEKKALLE KYTVQENQLP RIQYTDPIAK YYGLKRGEVV KIIRNSETSG RYVTYRFVI
101: ALSAVTDANS KRILYLESFK ETELLMNVKE HAFVPEHIAL TTEEKKALLE KYTVQENQLP RIQYTDPIAK YYGLKRGEVV KIIRNSETSG RYVTYRFVI
001: MLTEEELKRL YRIQKTLMQM LRDRGYFIAD SELTMTKQQF IRKHGDNMKR EDLVTLKAKR NDNSDQLYIF FPDEAKVGVK TMKMYTNRMK SENVFRAILV
101: VQQNLTPFAR TCISEISSKF HLEVFQEAEM LVNIKEHVLV PEHQVLTTEE KKTLLERYTV KETQLPRIQV TDPIARYFGL KRGQVVKIIR PSETAGRYVT
201: YRYVV
101: VQQNLTPFAR TCISEISSKF HLEVFQEAEM LVNIKEHVLV PEHQVLTTEE KKTLLERYTV KETQLPRIQV TDPIARYFGL KRGQVVKIIR PSETAGRYVT
201: YRYVV
Arabidopsis Description
NRPB5ADNA-directed RNA polymerases II and IV subunit 5A [Source:UniProtKB/Swiss-Prot;Acc:O81098]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.