Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G092690.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G22320.1 | HORVU3Hr1G092690.2 | AT3G24650.1 | 10743655 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G326800.2 | Wheat | nucleus | 99.52 | 99.52 |
| TraesCS3B01G363400.1 | Wheat | nucleus | 99.52 | 99.52 |
| TraesCS3A01G333200.2 | Wheat | nucleus | 99.52 | 99.52 |
| Os01t0805800-01 | Rice | nucleus | 88.57 | 88.57 |
| Zm00001d012557_P001 | Maize | extracellular | 86.19 | 86.19 |
| KXG33574 | Sorghum | nucleus | 85.24 | 85.24 |
| GSMUA_Achr2P00920_001 | Banana | nucleus | 78.57 | 80.88 |
| Solyc03g025570.2.1 | Tomato | cytosol | 40.48 | 72.65 |
| Solyc05g051790.2.1 | Tomato | nucleus | 61.9 | 69.15 |
| KRH48354 | Soybean | nucleus | 65.71 | 66.99 |
| VIT_11s0016g03530.t01 | Wine grape | nucleus | 65.24 | 66.5 |
| KRH39324 | Soybean | nucleus | 65.24 | 66.5 |
| AT3G22320.1 | Thale cress | nucleus | 64.76 | 66.34 |
| CDY35542 | Canola | nucleus | 63.81 | 65.05 |
| Bra001864.1-P | Field mustard | nucleus | 63.81 | 65.05 |
| PGSC0003DMT400051454 | Potato | nucleus | 63.81 | 65.05 |
| CDX92939 | Canola | nucleus | 63.81 | 65.05 |
| CDY24303 | Canola | nucleus | 63.81 | 65.05 |
| PGSC0003DMT400077392 | Potato | nucleus | 62.86 | 64.08 |
| CDY10635 | Canola | nucleus | 62.38 | 63.59 |
| Bra031350.1-P | Field mustard | nucleus | 62.38 | 63.59 |
| CDY37407 | Canola | nucleus | 61.9 | 63.11 |
| Solyc05g053510.1.1 | Tomato | nucleus | 57.14 | 57.97 |
| PGSC0003DMT400069997 | Potato | nucleus | 56.67 | 57.49 |
| Bra006521.1-P | Field mustard | nucleus | 51.43 | 54.27 |
| CDX88871 | Canola | nucleus | 50.95 | 50.47 |
| CDX70895 | Canola | nucleus | 49.05 | 49.52 |
| HORVU2Hr1G084270.1 | Barley | nucleus | 48.1 | 49.51 |
| HORVU6Hr1G071230.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 22.86 | 48.0 |
| HORVU1Hr1G048500.1 | Barley | endoplasmic reticulum | 10.95 | 46.94 |
| AT3G16680.1 | Thale cress | golgi | 18.57 | 44.83 |
| HORVU2Hr1G084300.6 | Barley | nucleus, plastid | 58.57 | 44.57 |
| CDX88650 | Canola | nucleus | 44.29 | 44.29 |
| CDY11839 | Canola | nucleus | 44.29 | 44.29 |
| Bra006791.1-P | Field mustard | nucleus | 44.29 | 44.29 |
| AT5G57980.1 | Thale cress | nucleus | 44.29 | 44.29 |
| HORVU7Hr1G020400.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 23.33 | 43.75 |
| HORVU1Hr1G052270.3 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 22.86 | 42.86 |
| HORVU4Hr1G028860.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 22.38 | 41.96 |
| HORVU2Hr1G026650.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 21.9 | 41.07 |
| HORVU6Hr1G011700.1 | Barley | endoplasmic reticulum, nucleus | 31.43 | 36.26 |
| HORVU5Hr1G043080.6 | Barley | nucleus | 35.24 | 32.46 |
| HORVU0Hr1G038750.1 | Barley | nucleus | 36.19 | 28.15 |
Protein Annotations
| MapMan:15.1.6.3 | Gene3D:3.40.1340.10 | Gene3D:3.90.940.20 | EMBL:AK360731 | EMBL:AK370813 | EMBL:AK371656 |
| InterPro:DNA_RNA_pol_RPB5_euk/virus | UniProt:F2DA18 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 |
| GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016740 | EnsemblPlantsGene:HORVU3Hr1G078930 | EnsemblPlants:HORVU3Hr1G078930.1 | InterPro:IPR035913 | InterPro:IPR036710 | HAMAP:MF_00025 |
| PFAM:PD005155 | PFAM:PF01191 | PFAM:PF03871 | PIRSF:PIRSF000747 | ScanProsite:PS01110 | PANTHER:PTHR10535 |
| InterPro:RNA_pol_Rpb5_N | InterPro:RNA_pol_Rpb5_N_sf | InterPro:RNA_pol_subH/Rpb5_C | InterPro:RNA_pol_subH/Rpb5_CS | InterPro:RPB5-like | InterPro:RpoH/RPB5 |
| SUPFAM:SSF53036 | SUPFAM:SSF55287 | UniParc:UPI00020059CB | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DA18]
Coordinates
chrchr3H:-:581047343..581049277
Molecular Weight (calculated)
24793.5 Da
IEP (calculated)
9.928
GRAVY (calculated)
-0.429
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MASGLVTEDV TVGRLVRIRR TVMHMLRDRG YLVVEHELSM TRRDFQRKYG ETFHREDMLI NKCKKNDPND QIYVFFPNDE KVGMKHIKKY VEMMNAEKVS
101: RAILVVQQNL TPFAKSFLQE LEPKIHLEVF QDAEMLINIK EHVLVPEHQV LANEEKKTLL ARYTLKETQL PRIQITDPIA RYYGLKRGQV VKIIRPSETA
201: GRYVTYRYVV
101: RAILVVQQNL TPFAKSFLQE LEPKIHLEVF QDAEMLINIK EHVLVPEHQV LANEEKKTLL ARYTLKETQL PRIQITDPIA RYYGLKRGQV VKIIRPSETA
201: GRYVTYRYVV
001: MLTEEELKRL YRIQKTLMQM LRDRGYFIAD SELTMTKQQF IRKHGDNMKR EDLVTLKAKR NDNSDQLYIF FPDEAKVGVK TMKMYTNRMK SENVFRAILV
101: VQQNLTPFAR TCISEISSKF HLEVFQEAEM LVNIKEHVLV PEHQVLTTEE KKTLLERYTV KETQLPRIQV TDPIARYFGL KRGQVVKIIR PSETAGRYVT
201: YRYVV
101: VQQNLTPFAR TCISEISSKF HLEVFQEAEM LVNIKEHVLV PEHQVLTTEE KKTLLERYTV KETQLPRIQV TDPIARYFGL KRGQVVKIIR PSETAGRYVT
201: YRYVV
Arabidopsis Description
NRPB5ADNA-directed RNA polymerases II and IV subunit 5A [Source:UniProtKB/Swiss-Prot;Acc:O81098]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.