CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88871	Canola	nucleus	90.38	88.68
VIT_11s0016g03530.t01	Wine grape	nucleus	57.69	58.25
CDY35542	Canola	nucleus	56.73	57.28
CDX92939	Canola	nucleus	56.73	57.28
CDY24303	Canola	nucleus	56.73	57.28
CDY10635	Canola	nucleus	56.25	56.8
KRH39324	Soybean	nucleus	55.77	56.31
CDY37407	Canola	nucleus	55.77	56.31
KRH48354	Soybean	nucleus	55.77	56.31
PGSC0003DMT400051454	Potato	nucleus	54.81	55.34
PGSC0003DMT400077392	Potato	nucleus	54.81	55.34
GSMUA_AchrUn_...	Banana	nucleus	53.85	54.11
Solyc05g051790.2.1	Tomato	nucleus	48.56	53.72
Solyc03g025570.2.1	Tomato	cytosol	29.33	52.14
GSMUA_Achr2P00920_001	Banana	nucleus	50.96	51.96
Solyc05g053510.1.1	Tomato	nucleus	51.44	51.69
Os01t0805800-01	Rice	nucleus	50.48	50.0
Zm00001d012557_P001	Maize	extracellular	50.0	49.52
TraesCS2D01G344900.1	Wheat	nucleus	49.52	49.28
TraesCS2B01G364600.1	Wheat	nucleus, plastid	49.52	49.28
TraesCS3A01G333200.2	Wheat	nucleus	49.52	49.05
TraesCS3B01G363400.1	Wheat	nucleus	49.52	49.05
HORVU3Hr1G078930.1	Barley	nucleus	49.52	49.05
TraesCS3D01G326800.2	Wheat	nucleus	49.52	49.05
TraesCS2A01G346200.1	Wheat	nucleus	49.04	48.8
PGSC0003DMT400069997	Potato	nucleus	48.56	48.79
KXG33574	Sorghum	nucleus	49.04	48.57
Zm00001d003242_P001	Maize	mitochondrion	48.08	48.54
TraesCS2A01G346300.1	Wheat	nucleus	47.6	48.29
KXG26596	Sorghum	nucleus	47.12	47.57
TraesCS2B01G364700.1	Wheat	nucleus, plastid	46.63	47.32
TraesCS2D01G345000.2	Wheat	nucleus	46.63	47.32
TraesCS2D01G344800.1	Wheat	mitochondrion, nucleus	44.71	45.59
TraesCS2B01G364500.1	Wheat	nucleus	44.23	45.1
HORVU2Hr1G084270.1	Barley	nucleus	44.23	45.1
AT3G16680.1	Thale cress	golgi	18.75	44.83
TraesCS2A01G346100.2	Wheat	nucleus	43.75	44.61
Os04t0487300-01	Rice	nucleus	32.69	40.72
CDX88650	Canola	nucleus	39.42	39.05
CDY11839	Canola	nucleus	39.42	39.05
HORVU6Hr1G071230.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	18.27	38.0
HORVU1Hr1G052270.3	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	19.71	36.61
HORVU2Hr1G084300.6	Barley	nucleus, plastid	47.6	35.87
HORVU7Hr1G020400.1	Barley	cytosol, mitochondrion, nucleus, plastid	19.23	35.71
HORVU4Hr1G028860.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	19.23	35.71
HORVU1Hr1G048500.1	Barley	endoplasmic reticulum	8.17	34.69
HORVU2Hr1G026650.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	18.27	33.93
CDY14763	Canola	nucleus	30.29	28.25
HORVU6Hr1G011700.1	Barley	endoplasmic reticulum, nucleus	24.52	28.02
CDY06931	Canola	nucleus	29.81	27.8
CDX72073	Canola	nucleus	30.29	27.39
CDY06137	Canola	nucleus	30.29	27.27
CDY13211	Canola	nucleus	28.37	23.98
CDX76143	Canola	cytosol	27.88	23.11

Protein Annotations

MapMan:15.1.6.3	Gene3D:3.40.1340.10	Gene3D:3.90.940.20	GO:A0A078C1X5	EnsemblPlants:CDX70895	ProteinID:CDX70895
ProteinID:CDX70895.1	InterPro:DNA_RNA_pol_RPB5_euk/virus	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00140797001	InterPro:IPR035913	InterPro:IPR036710	HAMAP:MF_00025	PFAM:PD005155
PFAM:PF01191	PFAM:PF03871	PIRSF:PIRSF000747	PANTHER:PTHR10535	InterPro:RNA_pol_Rpb5_N	InterPro:RNA_pol_Rpb5_N_sf
InterPro:RNA_pol_subH/Rpb5_C	InterPro:RPB5-like	InterPro:RpoH/RPB5	SUPFAM:SSF53036	SUPFAM:SSF55287	UniParc:UPI0004EDC2E1
SEG:seg	:	:	:	:	:

Description

BnaC03g09790D

Coordinates

chrLK031791:+:2620407..2621364

Molecular Weight (calculated)

24334.7 Da

IEP (calculated)

9.375

GRAVY (calculated)

-0.378

Length

208 amino acids

Sequence
(BLAST)

001: MSLSEEEIRM LFRVTKTLNH ILKDRGYIVT DAELEMTQEQ FIDKYGENME RKDLVTIKTK KKDKSDKIFV FFLQETKVKM GDIKACFERM VSHNVLRAIL
101: VVKKEMNRFA SSAITDANSK GILYLESFKE TELLMNVKEH AFVPEHIALT TAEKEALLEK YTVQENQLPR IQYTDPIAKY YGLKRGEVVK IIRNSETSGR
201: YVTYRFVI

Best Arabidopsis Sequence Match ( AT3G22320.1 )
(BLAST)

001: MLTEEELKRL YRIQKTLMQM LRDRGYFIAD SELTMTKQQF IRKHGDNMKR EDLVTLKAKR NDNSDQLYIF FPDEAKVGVK TMKMYTNRMK SENVFRAILV
101: VQQNLTPFAR TCISEISSKF HLEVFQEAEM LVNIKEHVLV PEHQVLTTEE KKTLLERYTV KETQLPRIQV TDPIARYFGL KRGQVVKIIR PSETAGRYVT
201: YRYVV

Arabidopsis Description

NRPB5ADNA-directed RNA polymerases II and IV subunit 5A [Source:UniProtKB/Swiss-Prot;Acc:O81098]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.