Factsheet for TraesCS2A01G346100.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G417300.1
TraesCS3B01G452200.1
TraesCS3D01G412800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22320.1	TraesCS3A01G417300.1	AT3G24650.1	10743655
AT3G22320.1	TraesCS3B01G452200.1	AT3G24650.1	10743655
AT3G22320.1	TraesCS3D01G412800.1	AT3G24650.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G344800.1	Wheat	mitochondrion, nucleus	95.59	95.59
TraesCS2B01G364500.1	Wheat	nucleus	93.63	93.63
HORVU2Hr1G084270.1	Barley	nucleus	89.22	89.22
Zm00001d003242_P001	Maize	mitochondrion	61.27	60.68
TraesCS2A01G346300.1	Wheat	nucleus	60.29	60.0
TraesCS2A01G346200.1	Wheat	nucleus	60.78	59.33
KXG26596	Sorghum	nucleus	57.84	57.28
Solyc03g025570.2.1	Tomato	cytosol	32.35	56.41
GSMUA_AchrUn_...	Banana	nucleus	56.86	56.04
KRH48354	Soybean	nucleus	54.41	53.88
KRH39324	Soybean	nucleus	53.92	53.4
VIT_11s0016g03530.t01	Wine grape	nucleus	53.92	53.4
Solyc05g051790.2.1	Tomato	nucleus	49.02	53.19
Os04t0487300-01	Rice	nucleus	43.14	52.69
CDY24303	Canola	nucleus	52.94	52.43
CDY35542	Canola	nucleus	52.94	52.43
Bra001864.1-P	Field mustard	nucleus	52.94	52.43
CDX92939	Canola	nucleus	52.94	52.43
PGSC0003DMT400077392	Potato	nucleus	52.45	51.94
PGSC0003DMT400051454	Potato	nucleus	52.45	51.94
Bra031350.1-P	Field mustard	nucleus	51.96	51.46
CDY10635	Canola	nucleus	51.96	51.46
CDY37407	Canola	nucleus	51.47	50.97
AT3G22320.1	Thale cress	nucleus	50.98	50.73
TraesCS3A01G333200.2	Wheat	nucleus	50.0	48.57
Solyc05g053510.1.1	Tomato	nucleus	47.55	46.86
Bra006521.1-P	Field mustard	nucleus	45.59	46.73
PGSC0003DMT400069997	Potato	nucleus	46.57	45.89
CDX88871	Canola	nucleus	46.57	44.81
CDX70895	Canola	nucleus	44.61	43.75
AT5G57980.1	Thale cress	nucleus	44.12	42.86
Bra006791.1-P	Field mustard	nucleus	42.65	41.43
CDX88650	Canola	nucleus	42.65	41.43
CDY11839	Canola	nucleus	42.16	40.95
AT3G16680.1	Thale cress	golgi	14.71	34.48
TraesCS5A01G131700.1	Wheat	nucleus	36.76	33.19
TraesCS4A01G185400.1	Wheat	nucleus	38.24	30.95

Protein Annotations

MapMan:15.1.6.3	Gene3D:3.40.1340.10	Gene3D:3.90.940.20	InterPro:DNA_RNA_pol_RPB5_euk/virus	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	InterPro:IPR035913	InterPro:IPR036710	HAMAP:MF_00025
PFAM:PD005155	PFAM:PF01191	PFAM:PF03871	PIRSF:PIRSF000747	PANTHER:PTHR10535	InterPro:RNA_pol_Rpb5_N
InterPro:RNA_pol_Rpb5_N_sf	InterPro:RNA_pol_subH/Rpb5_C	InterPro:RPB5-like	InterPro:RpoH/RPB5	SUPFAM:SSF53036	SUPFAM:SSF55287
EnsemblPlantsGene:TraesCS2A01G346100	EnsemblPlants:TraesCS2A01G346100.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2A:-:584515903..584518499

Molecular Weight (calculated)

23538.3 Da

IEP (calculated)

8.214

GRAVY (calculated)

-0.558

Length

204 amino acids

Sequence
(BLAST)

001: MASDGDNKRL FRVRRTVLQM LGDRGYSVKD EEIKLSLHEF VERYGDPVRR DEIVIHCEKQ GDPNDKVNVF FLDESKTGLA VVRSCVEKMK LGNATNGIFV
101: LQKALTGPAR TEVAQSKKYH LEVFQEGELL VNITEHHLVP KHELLSDEEK KELLQKYTAH ETQLPRIQLT DPVARYYGMK RGQVVKITRQ SEVAGEYVTY
201: RYVM

Best Arabidopsis Sequence Match ( AT5G57980.1 )
(BLAST)

001: MSDMDDEITR IFKVRRTVLQ MLRDRGYTIE ESDLNLKREE FVQRFCKTMN KVNKEALFVS ANKGPNPADK IYVFYPEGPK VGVPVIKKEV AIKMRDDKVH
101: RGIVVVPMAI TAPARMAVSE LNKMLTIEVF EEAELVTNIT EHKLVNKYYV LDDQAKKKLL NTYTVQDTQL PRILVTDPLA RYYGLKRGQV VKIRRSDATS
201: LDYYTYRFAV

Arabidopsis Description

NRPB5L1DNA-directed RNA polymerase subunit 5-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJL8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.