Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY11839 | Canola | nucleus | 82.38 | 82.38 |
Bra006791.1-P | Field mustard | nucleus | 81.9 | 81.9 |
CDX88650 | Canola | nucleus | 81.9 | 81.9 |
KXG26596 | Sorghum | nucleus | 47.62 | 48.54 |
Zm00001d003242_P001 | Maize | mitochondrion | 46.67 | 47.57 |
TraesCS2D01G345000.2 | Wheat | nucleus | 44.76 | 45.85 |
TraesCS2B01G364700.1 | Wheat | nucleus, plastid | 44.76 | 45.85 |
GSMUA_Achr2P00920_001 | Banana | nucleus | 44.29 | 45.59 |
TraesCS2A01G346300.1 | Wheat | nucleus | 44.29 | 45.37 |
HORVU2Hr1G084270.1 | Barley | nucleus | 43.81 | 45.1 |
TraesCS2D01G344900.1 | Wheat | nucleus | 44.76 | 44.98 |
TraesCS2B01G364600.1 | Wheat | nucleus, plastid | 44.76 | 44.98 |
GSMUA_AchrUn_... | Banana | nucleus | 44.29 | 44.93 |
TraesCS2A01G346200.1 | Wheat | nucleus | 44.29 | 44.5 |
HORVU3Hr1G078930.1 | Barley | nucleus | 44.29 | 44.29 |
TraesCS2A01G346100.2 | Wheat | nucleus | 42.86 | 44.12 |
TraesCS3B01G363400.1 | Wheat | nucleus | 43.81 | 43.81 |
TraesCS3D01G326800.2 | Wheat | nucleus | 43.81 | 43.81 |
TraesCS3A01G333200.2 | Wheat | nucleus | 43.81 | 43.81 |
KXG33574 | Sorghum | nucleus | 43.81 | 43.81 |
Os04t0487300-01 | Rice | nucleus | 34.76 | 43.71 |
TraesCS2D01G344800.1 | Wheat | mitochondrion, nucleus | 42.38 | 43.63 |
AT3G22320.1 | Thale cress | nucleus | 42.38 | 43.41 |
Os01t0805800-01 | Rice | nucleus | 43.33 | 43.33 |
TraesCS2B01G364500.1 | Wheat | nucleus | 41.43 | 42.65 |
Zm00001d012557_P001 | Maize | extracellular | 42.38 | 42.38 |
HORVU1Hr1G048500.1 | Barley | endoplasmic reticulum | 8.57 | 36.73 |
HORVU6Hr1G071230.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 16.67 | 35.0 |
HORVU2Hr1G084300.6 | Barley | nucleus, plastid | 43.81 | 33.33 |
HORVU4Hr1G028860.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 17.62 | 33.04 |
HORVU2Hr1G026650.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 17.62 | 33.04 |
HORVU1Hr1G052270.3 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 17.62 | 33.04 |
AT3G16680.1 | Thale cress | golgi | 13.33 | 32.18 |
HORVU7Hr1G020400.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 17.14 | 32.14 |
AT2G41340.1 | Thale cress | nucleus | 30.95 | 29.82 |
AT3G57080.1 | Thale cress | nucleus | 29.52 | 27.93 |
AT3G54490.1 | Thale cress | nucleus | 29.52 | 26.61 |
HORVU6Hr1G011700.1 | Barley | endoplasmic reticulum, nucleus | 22.86 | 26.37 |
Protein Annotations
MapMan:15.1.6.3 | Gene3D:3.40.1340.10 | Gene3D:3.90.940.20 | EntrezGene:835909 | UniProt:A0A178UMU7 | ProteinID:AED96981.1 |
ArrayExpress:AT5G57980 | EnsemblPlantsGene:AT5G57980 | RefSeq:AT5G57980 | TAIR:AT5G57980 | RefSeq:AT5G57980-TAIR-G | EnsemblPlants:AT5G57980.1 |
TAIR:AT5G57980.1 | ProteinID:BAB08868.1 | InterPro:DNA_RNA_pol_RPB5_euk/virus | GO:GO:0001054 | GO:GO:0001055 | GO:GO:0001056 |
GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005665 |
GO:GO:0005666 | GO:GO:0005730 | GO:GO:0005736 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006360 |
GO:GO:0006366 | GO:GO:0006383 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
GO:GO:0016740 | InterPro:IPR035913 | InterPro:IPR036710 | RefSeq:NP_200606.1 | ProteinID:OAO93991.1 | PFAM:PD005155 |
PFAM:PF01191 | PFAM:PF03871 | PIRSF:PIRSF000747 | PO:PO:0000037 | PO:PO:0007611 | PO:PO:0009005 |
PO:PO:0009031 | PO:PO:0009046 | PO:PO:0025022 | PANTHER:PTHR10535 | UniProt:Q9FJL8 | InterPro:RNA_pol_Rpb5_N |
InterPro:RNA_pol_Rpb5_N_sf | InterPro:RNA_pol_subH/Rpb5_C | InterPro:RPB5-like | Symbol:RPB5C | SUPFAM:SSF53036 | SUPFAM:SSF55287 |
UniParc:UPI00000A84B5 | : | : | : | : | : |
Description
NRPB5L1DNA-directed RNA polymerase subunit 5-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJL8]
Coordinates
chr5:-:23468959..23469856
Molecular Weight (calculated)
24344.8 Da
IEP (calculated)
9.858
GRAVY (calculated)
-0.347
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDMDDEITR IFKVRRTVLQ MLRDRGYTIE ESDLNLKREE FVQRFCKTMN KVNKEALFVS ANKGPNPADK IYVFYPEGPK VGVPVIKKEV AIKMRDDKVH
101: RGIVVVPMAI TAPARMAVSE LNKMLTIEVF EEAELVTNIT EHKLVNKYYV LDDQAKKKLL NTYTVQDTQL PRILVTDPLA RYYGLKRGQV VKIRRSDATS
201: LDYYTYRFAV
101: RGIVVVPMAI TAPARMAVSE LNKMLTIEVF EEAELVTNIT EHKLVNKYYV LDDQAKKKLL NTYTVQDTQL PRILVTDPLA RYYGLKRGQV VKIRRSDATS
201: LDYYTYRFAV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.