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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 1
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY11839 Canola nucleus 82.38 82.38
Bra006791.1-P Field mustard nucleus 81.9 81.9
CDX88650 Canola nucleus 81.9 81.9
KXG26596 Sorghum nucleus 47.62 48.54
Zm00001d003242_P001 Maize mitochondrion 46.67 47.57
TraesCS2D01G345000.2 Wheat nucleus 44.76 45.85
TraesCS2B01G364700.1 Wheat nucleus, plastid 44.76 45.85
GSMUA_Achr2P00920_001 Banana nucleus 44.29 45.59
TraesCS2A01G346300.1 Wheat nucleus 44.29 45.37
HORVU2Hr1G084270.1 Barley nucleus 43.81 45.1
TraesCS2D01G344900.1 Wheat nucleus 44.76 44.98
TraesCS2B01G364600.1 Wheat nucleus, plastid 44.76 44.98
GSMUA_AchrUn_... Banana nucleus 44.29 44.93
TraesCS2A01G346200.1 Wheat nucleus 44.29 44.5
HORVU3Hr1G078930.1 Barley nucleus 44.29 44.29
TraesCS2A01G346100.2 Wheat nucleus 42.86 44.12
TraesCS3B01G363400.1 Wheat nucleus 43.81 43.81
TraesCS3D01G326800.2 Wheat nucleus 43.81 43.81
TraesCS3A01G333200.2 Wheat nucleus 43.81 43.81
KXG33574 Sorghum nucleus 43.81 43.81
Os04t0487300-01 Rice nucleus 34.76 43.71
TraesCS2D01G344800.1 Wheat mitochondrion, nucleus 42.38 43.63
AT3G22320.1 Thale cress nucleus 42.38 43.41
Os01t0805800-01 Rice nucleus 43.33 43.33
TraesCS2B01G364500.1 Wheat nucleus 41.43 42.65
Zm00001d012557_P001 Maize extracellular 42.38 42.38
HORVU1Hr1G048500.1 Barley endoplasmic reticulum 8.57 36.73
HORVU6Hr1G071230.1 Barley cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole 16.67 35.0
HORVU2Hr1G084300.6 Barley nucleus, plastid 43.81 33.33
HORVU4Hr1G028860.1 Barley cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole 17.62 33.04
HORVU2Hr1G026650.1 Barley cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole 17.62 33.04
HORVU1Hr1G052270.3 Barley cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 17.62 33.04
AT3G16680.1 Thale cress golgi 13.33 32.18
HORVU7Hr1G020400.1 Barley cytosol, mitochondrion, nucleus, plastid 17.14 32.14
AT2G41340.1 Thale cress nucleus 30.95 29.82
AT3G57080.1 Thale cress nucleus 29.52 27.93
AT3G54490.1 Thale cress nucleus 29.52 26.61
HORVU6Hr1G011700.1 Barley endoplasmic reticulum, nucleus 22.86 26.37
Protein Annotations
MapMan:15.1.6.3Gene3D:3.40.1340.10Gene3D:3.90.940.20EntrezGene:835909UniProt:A0A178UMU7ProteinID:AED96981.1
ArrayExpress:AT5G57980EnsemblPlantsGene:AT5G57980RefSeq:AT5G57980TAIR:AT5G57980RefSeq:AT5G57980-TAIR-GEnsemblPlants:AT5G57980.1
TAIR:AT5G57980.1ProteinID:BAB08868.1InterPro:DNA_RNA_pol_RPB5_euk/virusGO:GO:0001054GO:GO:0001055GO:GO:0001056
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003824GO:GO:0003899GO:GO:0005488
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005654GO:GO:0005665
GO:GO:0005666GO:GO:0005730GO:GO:0005736GO:GO:0006139GO:GO:0006351GO:GO:0006360
GO:GO:0006366GO:GO:0006383GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
GO:GO:0016740InterPro:IPR035913InterPro:IPR036710RefSeq:NP_200606.1ProteinID:OAO93991.1PFAM:PD005155
PFAM:PF01191PFAM:PF03871PIRSF:PIRSF000747PO:PO:0000037PO:PO:0007611PO:PO:0009005
PO:PO:0009031PO:PO:0009046PO:PO:0025022PANTHER:PTHR10535UniProt:Q9FJL8InterPro:RNA_pol_Rpb5_N
InterPro:RNA_pol_Rpb5_N_sfInterPro:RNA_pol_subH/Rpb5_CInterPro:RPB5-likeSymbol:RPB5CSUPFAM:SSF53036SUPFAM:SSF55287
UniParc:UPI00000A84B5:::::
Description
NRPB5L1DNA-directed RNA polymerase subunit 5-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJL8]
Coordinates
chr5:-:23468959..23469856
Molecular Weight (calculated)
24344.8 Da
IEP (calculated)
9.858
GRAVY (calculated)
-0.347
Length
210 amino acids
Sequence
(BLAST)
001: MSDMDDEITR IFKVRRTVLQ MLRDRGYTIE ESDLNLKREE FVQRFCKTMN KVNKEALFVS ANKGPNPADK IYVFYPEGPK VGVPVIKKEV AIKMRDDKVH
101: RGIVVVPMAI TAPARMAVSE LNKMLTIEVF EEAELVTNIT EHKLVNKYYV LDDQAKKKLL NTYTVQDTQL PRILVTDPLA RYYGLKRGQV VKIRRSDATS
201: LDYYTYRFAV
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.