Factsheet for Zm00001d012557_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d042396_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22320.1	Zm00001d042396_P003	AT3G24650.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG33574	Sorghum	nucleus	96.19	96.19
Os01t0805800-01	Rice	nucleus	93.33	93.33
TraesCS3D01G326800.2	Wheat	nucleus	86.67	86.67
TraesCS3B01G363400.1	Wheat	nucleus	86.67	86.67
TraesCS3A01G333200.2	Wheat	nucleus	86.67	86.67
HORVU3Hr1G078930.1	Barley	nucleus	86.19	86.19
GSMUA_Achr2P00920_001	Banana	nucleus	78.57	80.88
Solyc03g025570.2.1	Tomato	cytosol	40.95	73.5
Solyc05g051790.2.1	Tomato	nucleus	62.38	69.68
KRH48354	Soybean	nucleus	67.62	68.93
VIT_11s0016g03530.t01	Wine grape	nucleus	67.14	68.45
KRH39324	Soybean	nucleus	67.14	68.45
AT3G22320.1	Thale cress	nucleus	66.67	68.29
CDY35542	Canola	nucleus	66.19	67.48
CDY24303	Canola	nucleus	66.19	67.48
CDX92939	Canola	nucleus	66.19	67.48
Bra001864.1-P	Field mustard	nucleus	66.19	67.48
PGSC0003DMT400051454	Potato	nucleus	65.24	66.5
CDY37407	Canola	nucleus	63.81	65.05
CDY10635	Canola	nucleus	63.81	65.05
Bra031350.1-P	Field mustard	nucleus	63.81	65.05
PGSC0003DMT400077392	Potato	nucleus	63.81	65.05
Zm00001d003242_P001	Maize	mitochondrion	60.95	62.14
Solyc05g053510.1.1	Tomato	nucleus	57.62	58.45
PGSC0003DMT400069997	Potato	nucleus	56.19	57.0
Bra006521.1-P	Field mustard	nucleus	50.95	53.77
CDX88871	Canola	nucleus	50.95	50.47
CDX70895	Canola	nucleus	49.52	50.0
AT3G16680.1	Thale cress	golgi	19.05	45.98
CDX88650	Canola	nucleus	44.29	44.29
Bra006791.1-P	Field mustard	nucleus	44.29	44.29
CDY11839	Canola	nucleus	44.29	44.29
AT5G57980.1	Thale cress	nucleus	42.38	42.38

Protein Annotations

EntrezGene:100273250	EntrezGene:100286230	MapMan:15.1.6.3	Gene3D:3.40.1340.10	Gene3D:3.90.940.20	ProteinID:AQK99862.1
UniProt:B4FU06	EMBL:BT040594	InterPro:DNA_RNA_pol_RPB5_euk/virus	EMBL:EU976287	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	InterPro:IPR035913	InterPro:IPR036710	HAMAP:MF_00025
PFAM:PD005155	PFAM:PF01191	PFAM:PF03871	PIRSF:PIRSF000747	ScanProsite:PS01110	PANTHER:PTHR10535
InterPro:RNA_pol_Rpb5_N	InterPro:RNA_pol_Rpb5_N_sf	InterPro:RNA_pol_subH/Rpb5_C	InterPro:RNA_pol_subH/Rpb5_CS	InterPro:RPB5-like	InterPro:RpoH/RPB5
SUPFAM:SSF53036	SUPFAM:SSF55287	UniParc:UPI00017B7F8E	EnsemblPlantsGene:Zm00001d012557	EnsemblPlants:Zm00001d012557_P001	EnsemblPlants:Zm00001d012557_T001

Description

DNA-directed RNA polymerases II and IV subunit 5A

Coordinates

chr8:+:176581701..176584547

Molecular Weight (calculated)

24870.4 Da

IEP (calculated)

9.799

GRAVY (calculated)

-0.423

Length

210 amino acids

Sequence
(BLAST)

001: MSAGLVTDEA TVGRLYRIRR TVMQMLRDRG YLVVDHELAT SRRDFLRKFG ESFHREDLLI NKYKKNDPSD QIYVFFPNDD KVGMKHIKKY VEMMTHENVS
101: RAVLVLQQNL TPFAKSFLIE LEPKIHLEIF QEAEMLINIK EHVLVPEHQV LTNEEKKTLL ERYTLKETQL PRIQITDPIA RYYGLRRGQV VKIIRPSETA
201: GRYVTYRYVV

Best Arabidopsis Sequence Match ( AT3G22320.1 )
(BLAST)

001: MLTEEELKRL YRIQKTLMQM LRDRGYFIAD SELTMTKQQF IRKHGDNMKR EDLVTLKAKR NDNSDQLYIF FPDEAKVGVK TMKMYTNRMK SENVFRAILV
101: VQQNLTPFAR TCISEISSKF HLEVFQEAEM LVNIKEHVLV PEHQVLTTEE KKTLLERYTV KETQLPRIQV TDPIARYFGL KRGQVVKIIR PSETAGRYVT
201: YRYVV

Arabidopsis Description

NRPB5ADNA-directed RNA polymerases II and IV subunit 5A [Source:UniProtKB/Swiss-Prot;Acc:O81098]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.