Factsheet for Zm00001d042396_P003

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003242_P001
Zm00001d003811_P001
Zm00001d005366_P001
Zm00001d005795_P002
Zm00001d012557_P001
Zm00001d013074_P003
Zm00001d013708_P001
Zm00001d017241_P002
Zm00001d018818_P001
Zm00001d018971_P003
Zm00001d030995_P002
Zm00001d034447_P001
Zm00001d034455_P001
Zm00001d034457_P003
Zm00001d043140_P001
Zm00001d044406_P001
Zm00001d051114_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24650.1	Zm00001d013708_P001	AT1G08780.1	10743655
AT3G24650.1	Zm00001d003242_P001	AT3G22320.1	10743655
AT3G24650.1	Zm00001d012557_P001	AT3G22320.1	10743655
AT3G24650.1	Zm00001d013074_P003	AT3G54620.1	12657652
AT3G24650.1	Zm00001d018971_P003	AT3G54620.1	12657652
AT3G24650.1	Zm00001d030995_P002	AT3G54620.1	12657652
AT3G24650.1	Zm00001d034447_P001	AT3G54620.1	12657652
AT3G24650.1	Zm00001d034455_P001	AT3G54620.1	12657652
AT3G24650.1	Zm00001d034457_P003	AT3G54620.1	12657652
AT3G24650.1	Zm00001d005795_P002	AT5G20910.1	10743655
AT3G24650.1	Zm00001d003811_P001	AT5G61380.1	10743655
AT3G24650.1	Zm00001d005366_P001	AT5G61380.1	10743655
AT3G24650.1	Zm00001d017241_P002	AT5G61380.1	10743655
AT3G24650.1	Zm00001d018818_P001	AT5G61380.1	10743655
AT3G24650.1	Zm00001d043140_P001	AT5G61380.1	10743655
AT3G24650.1	Zm00001d044406_P001	AT5G61380.1	10743655
AT3G24650.1	Zm00001d051114_P001	AT5G61380.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04085	Sorghum	nucleus	88.28	87.02
Os01t0911700-02	Rice	nucleus	67.58	64.24
HORVU3Hr1G092690.2	Barley	nucleus	61.07	61.88
TraesCS3D01G412800.1	Wheat	nucleus	61.65	61.56
TraesCS3B01G452200.1	Wheat	nucleus	61.22	61.48
TraesCS3A01G417300.1	Wheat	nucleus	61.22	61.13
GSMUA_AchrUn_...	Banana	nucleus	37.63	38.35
PGSC0003DMT400051746	Potato	nucleus	30.1	35.86
GSMUA_Achr7P23040_001	Banana	nucleus	37.92	35.74
Solyc06g083590.2.1	Tomato	nucleus	29.52	35.23
PGSC0003DMT400051934	Potato	nucleus	30.82	34.35
VIT_07s0005g05400.t01	Wine grape	nucleus	36.03	33.97
Solyc06g083600.1.1	Tomato	nucleus	30.39	33.87
CDY15121	Canola	nucleus	32.27	33.18
KRH46807	Soybean	nucleus	36.47	33.11
AT3G24650.1	Thale cress	nucleus	34.01	32.64
KRG99861	Soybean	nucleus	35.46	32.32
Bra013248.1-P	Field mustard	nucleus	33.43	32.22
CDX93029	Canola	nucleus	33.43	32.17
Zm00001d052750_P001	Maize	nucleus	11.72	21.95
Zm00001d011712_P001	Maize	mitochondrion	12.45	21.94
Zm00001d034965_P002	Maize	nucleus	11.29	20.97
Zm00001d001838_P001	Maize	nucleus	12.01	18.91
Zm00001d006597_P003	Maize	plastid	11.72	8.39
Zm00001d021790_P010	Maize	nucleus	11.43	8.17
Zm00001d012162_P002	Maize	mitochondrion	2.03	7.91
Zm00001d022440_P005	Maize	plastid	11.0	7.89
Zm00001d007173_P003	Maize	mitochondrion, nucleus	10.28	7.02
Zm00001d029836_P001	Maize	plastid	0.87	6.82
Zm00001d045970_P001	Maize	mitochondrion	2.32	6.2
Zm00001d038148_P001	Maize	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	2.32	5.46
Zm00001d037893_P001	Maize	mitochondrion	2.17	5.36

Protein Annotations

MapMan:15.5.5.5	Gene3D:2.40.330.10	UniProt:A0A1D6N3H6	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0000003
GO:GO:0001076	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006357	GO:GO:0007154	GO:GO:0007165
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009657	GO:GO:0009719
GO:GO:0009733	GO:GO:0009737	GO:GO:0009738	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793
GO:GO:0009987	GO:GO:0016043	GO:GO:0031930	GO:GO:0045893	InterPro:IPR003340	InterPro:IPR015300
ProteinID:ONM35246.1	PFAM:PF02362	PFscan:PS50863	PANTHER:PTHR31140	PANTHER:PTHR31140:SF1	SMART:SM01019
SUPFAM:SSF101936	UniParc:UPI000221B2FD	EnsemblPlantsGene:Zm00001d042396	EnsemblPlants:Zm00001d042396_P003	EnsemblPlants:Zm00001d042396_T003	SEG:seg

Description

viviparous1Regulatory protein viviparous-1

Coordinates

chr3:+:164461221..164466141

Molecular Weight (calculated)

73252.6 Da

IEP (calculated)

6.250

GRAVY (calculated)

-0.571

Length

691 amino acids

Sequence
(BLAST)

001: MEASAGSSPP HSQENPPEHG GDMGGAPAEE IGGEAADDFM FAEDTFPSLP DFPCLSSPSS STFSSNSSSN SSSAYTNTAG RAGGEPSEPA SAGEGFDALD
101: DIDQLLDFAS LSMPWDSEPF PGVSMMLENA MSAPPQPVGD GMSEEKAVPE GTTGGEEACM DASEGEELPR FFMEWLTSNR ENISAEDLRG IRLRRSTIEA
201: AAARLGGGRQ GTMQLLKLIL TWVQNHHLQR KRPRDVMEEE AGLHVQLPSP VANPPGYEFP AGGQDMAAGG GTSWMPHQQA FTPPAAYGGD AVYPSAAGQQ
301: YSFHQGPSTS SVVVNSQPFS PPPVGDMHGA NMAWPQQYVP FPPPGASTGS YPMPQPFSPG FGGQYAGAGA GHLSVAPQRM AGVEASATKE ARKKRMARQR
401: RLSCLQQQRS QQLSLGQIQA SVHLQEPSPR STHSGPVTPS AGGWGFWSPS SQQQVQNPLS KSNSSRAPPP SLEAAAVAPQ TKPAPAGARQ DDIHHRLAAA
501: SDKRQGAKAD KNLRFLLQKV LKQSDVGSLG RIVLPKKEAE VHLPELKTRD GISIPMEDIG TSRVWNMRYR FWPNNKSRMY LLENTGEFVR SNELQEGDFI
601: VIYSDVKSGK YLIRGVKVRP PPAQEQGSGS SGGGKHRPLC PAGPGRAAAA GAPEDAVVDG VSGACKGRSP EGVRRVRQQG AGAMSQMAVS I

Best Arabidopsis Sequence Match ( AT3G24650.1 )
(BLAST)

001: MKSLHVAANA GDLAEDCGIL GGDADDTVLM DGIDEVGREI WLDDHGGDNN HVHGHQDDDL IVHHDPSIFY GDLPTLPDFP CMSSSSSSST SPAPVNAIVS
101: SASSSSAASS STSSAASWAI LRSDGEDPTP NQNQYASGNC DDSSGALQST ASMEIPLDSS QGFGCGEGGG DCIDMMETFG YMDLLDSNEF FDTSAIFSQD
201: DDTQNPNLMD QTLERQEDQV VVPMMENNSG GDMQMMNSSL EQDDDLAAVF LEWLKNNKET VSAEDLRKVK IKKATIESAA RRLGGGKEAM KQLLKLILEW
301: VQTNHLQRRR TTTTTTNLSY QQSFQQDPFQ NPNPNNNNLI PPSDQTCFSP STWVPPPPQQ QAFVSDPGFG YMPAPNYPPQ PEFLPLLESP PSWPPPPQSG
401: PMPHQQFPMP PTSQYNQFGD PTGFNGYNMN PYQYPYVPAG QMRDQRLLRL CSSATKEARK KRMARQRRFL SHHHRHNNNN NNNNNNQQNQ TQIGETCAAV
501: APQLNPVATT ATGGTWMYWP NVPAVPPQLP PVMETQLPTM DRAGSASAMP RQQVVPDRRQ GWKPEKNLRF LLQKVLKQSD VGNLGRIVLP KKEAETHLPE
601: LEARDGISLA MEDIGTSRVW NMRYRFWPNN KSRMYLLENT GDFVKTNGLQ EGDFIVIYSD VKCGKYLIRG VKVRQPSGQK PEAPPSSAAT KRQNKSQRNI
701: NNNSPSANVV VASPTSQTVK

Arabidopsis Description

ABI3B3 domain-containing transcription factor ABI3 [Source:UniProtKB/Swiss-Prot;Acc:Q01593]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.