Factsheet for PGSC0003DMT400051934

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400019033
PGSC0003DMT400050100
PGSC0003DMT400050252
PGSC0003DMT400051454
PGSC0003DMT400069997
PGSC0003DMT400077392
PGSC0003DMT400083086

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24650.1	PGSC0003DMT400050100	AT1G08780.1	10743655
AT3G24650.1	PGSC0003DMT400051454	AT3G22320.1	10743655
AT3G24650.1	PGSC0003DMT400069997	AT3G22320.1	10743655
AT3G24650.1	PGSC0003DMT400077392	AT3G22320.1	10743655
AT3G24650.1	PGSC0003DMT400019033	AT5G20910.1	10743655
AT3G24650.1	PGSC0003DMT400050252	AT5G61380.1	10743655
AT3G24650.1	PGSC0003DMT400083086	AT5G61380.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g083600.1.1	Tomato	nucleus	95.16	95.16
PGSC0003DMT400051746	Potato	nucleus	72.26	77.24
VIT_07s0005g05400.t01	Wine grape	nucleus	49.35	41.75
KRG99861	Soybean	nucleus	47.1	38.52
KRH46807	Soybean	nucleus	46.77	38.11
OQU89229	Sorghum	nucleus	24.68	38.06
CDY15121	Canola	nucleus	40.65	37.5
CDX93029	Canola	nucleus	42.1	36.35
Bra013248.1-P	Field mustard	nucleus	41.94	36.26
AT3G24650.1	Thale cress	nucleus	42.1	36.25
GSMUA_AchrUn_...	Banana	nucleus	35.32	32.3
Zm00001d042396_P003	Maize	nucleus	34.35	30.82
TraesCS3D01G412800.1	Wheat	nucleus	34.19	30.64
TraesCS3B01G452200.1	Wheat	nucleus	33.87	30.52
HORVU3Hr1G092690.2	Barley	nucleus	33.39	30.35
GSMUA_Achr7P23040_001	Banana	nucleus	35.81	30.29
EES04085	Sorghum	nucleus	34.19	30.24
TraesCS3A01G417300.1	Wheat	nucleus	33.39	29.91
Os01t0911700-02	Rice	nucleus	33.55	28.61
PGSC0003DMT400052167	Potato	nucleus	10.16	21.95
PGSC0003DMT400064355	Potato	plastid	2.9	10.78
PGSC0003DMT400078282	Potato	nucleus	0.48	0.75
PGSC0003DMT400057590	Potato	nucleus	0.48	0.65

Protein Annotations

EntrezGene:102586961	MapMan:15.5.5.5	Gene3D:2.40.330.10	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300	UniProt:M1BSH3	PFAM:PF02362
EnsemblPlantsGene:PGSC0003DMG400020155	PGSC:PGSC0003DMG400020155	EnsemblPlants:PGSC0003DMT400051934	PFscan:PS50863	PANTHER:PTHR31140	PANTHER:PTHR31140:SF1
SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0002955396	RefSeq:XP_006352829.1	SEG:seg	:

Description

ABI3 [Source:PGSC_GENE;Acc:PGSC0003DMG400020155]

Coordinates

chr6:+:58498775..58501744

Molecular Weight (calculated)

70269.4 Da

IEP (calculated)

5.141

GRAVY (calculated)

-0.794

Length

620 amino acids

Sequence
(BLAST)

001: MERELHGVNN EDENTNLVVS VDDDIQMLQQ QQQDCTDFDP MDETDIWLNE NFSTDFTSLQ DFPCMSSSSS TSFSPLTESD PSSGVVLKSD ADEQDFEKKF
101: DTIGDQECLN VMDNVGYIDV NEFLDPMISF LHNENPQEQQ QQPPPQEGDD QGLSFFQGDS ELALMFFEWL KQNKDYISAE DMRSIKLKRS TIESASKRLG
201: STKEGKKQLL RLILDWVEQH RLQKKQMREA EAINQQVLQN SVPYNFDPNA CFYPPQWIPN APFPDSSTPV MTGPIQGYIG DPYSNGGLFP PPYSQTMSGG
301: ATSPTSAEYQ PMDTSQSWSP SQFTMATASQ YNPFPENDST NNVAMPDQSL FGAQYDPYQL FDGNGEILPR LGSCATKEAR KNRMARQRRL RPHHYRHQTR
401: IPRQITNEQS VMMGGEINNN YVMTQANNPG NWVCWPSPPM AMVSQSLPPE RPAMQSQNQQ KQVSASADKK QAFKSEKNLK FLLQKVLKQS DVNNLGRIVL
501: PKKEAERHLP HLETRDGISI AMEDIGTSRV WNMKYRFWPN NKSRMYLLEN TGDFVKANGL QEGDFIVIYA DMKCGKYLIR GVKVRQNGPK SEGKKQTKKN
601: PRKLSSAAAI SSSPVAQAVR

Best Arabidopsis Sequence Match ( AT3G24650.1 )
(BLAST)

001: MKSLHVAANA GDLAEDCGIL GGDADDTVLM DGIDEVGREI WLDDHGGDNN HVHGHQDDDL IVHHDPSIFY GDLPTLPDFP CMSSSSSSST SPAPVNAIVS
101: SASSSSAASS STSSAASWAI LRSDGEDPTP NQNQYASGNC DDSSGALQST ASMEIPLDSS QGFGCGEGGG DCIDMMETFG YMDLLDSNEF FDTSAIFSQD
201: DDTQNPNLMD QTLERQEDQV VVPMMENNSG GDMQMMNSSL EQDDDLAAVF LEWLKNNKET VSAEDLRKVK IKKATIESAA RRLGGGKEAM KQLLKLILEW
301: VQTNHLQRRR TTTTTTNLSY QQSFQQDPFQ NPNPNNNNLI PPSDQTCFSP STWVPPPPQQ QAFVSDPGFG YMPAPNYPPQ PEFLPLLESP PSWPPPPQSG
401: PMPHQQFPMP PTSQYNQFGD PTGFNGYNMN PYQYPYVPAG QMRDQRLLRL CSSATKEARK KRMARQRRFL SHHHRHNNNN NNNNNNQQNQ TQIGETCAAV
501: APQLNPVATT ATGGTWMYWP NVPAVPPQLP PVMETQLPTM DRAGSASAMP RQQVVPDRRQ GWKPEKNLRF LLQKVLKQSD VGNLGRIVLP KKEAETHLPE
601: LEARDGISLA MEDIGTSRVW NMRYRFWPNN KSRMYLLENT GDFVKTNGLQ EGDFIVIYSD VKCGKYLIRG VKVRQPSGQK PEAPPSSAAT KRQNKSQRNI
701: NNNSPSANVV VASPTSQTVK

Arabidopsis Description

ABI3B3 domain-containing transcription factor ABI3 [Source:UniProtKB/Swiss-Prot;Acc:Q01593]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.