Factsheet for GSMUA_Achr7P23040_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr2P00920_001
GSMUA_Achr2P04570_001
GSMUA_Achr2P12610_001
GSMUA_Achr4P09670_001
GSMUA_Achr4P17760_001
GSMUA_Achr4P28530_001
GSMUA_Achr7P07650_001
GSMUA_Achr8P24580_001
GSMUA_Achr9P19550_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24650.1	GSMUA_Achr4P17760_001	AT1G08780.1	10743655
AT3G24650.1	GSMUA_Achr2P00920_001	AT3G22320.1	10743655
AT3G24650.1	GSMUA_AchrUn_...	AT3G22320.1	10743655
AT3G24650.1	GSMUA_Achr10P...	AT3G54620.1	12657652
AT3G24650.1	GSMUA_Achr2P12610_001	AT3G54620.1	12657652
AT3G24650.1	GSMUA_Achr4P28530_001	AT3G54620.1	12657652
AT3G24650.1	GSMUA_Achr7P07650_001	AT3G54620.1	12657652
AT3G24650.1	GSMUA_Achr4P09670_001	AT5G20910.1	10743655
AT3G24650.1	GSMUA_Achr8P24580_001	AT5G20910.1	10743655
AT3G24650.1	GSMUA_Achr10P...	AT5G61380.1	10743655
AT3G24650.1	GSMUA_Achr2P04570_001	AT5G61380.1	10743655
AT3G24650.1	GSMUA_Achr9P19550_001	AT5G61380.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	nucleus	61.26	66.22
PGSC0003DMT400051746	Potato	nucleus	30.15	38.1
OQU89229	Sorghum	nucleus	20.87	38.06
Zm00001d042396_P003	Maize	nucleus	35.74	37.92
Solyc06g083590.2.1	Tomato	nucleus	29.6	37.48
EES04085	Sorghum	nucleus	35.47	37.09
VIT_07s0005g05400.t01	Wine grape	nucleus	36.29	36.29
PGSC0003DMT400051934	Potato	nucleus	30.29	35.81
Solyc06g083600.1.1	Tomato	nucleus	29.88	35.32
HORVU3Hr1G092690.2	Barley	nucleus	32.61	35.04
Os01t0911700-02	Rice	nucleus	34.52	34.8
TraesCS3B01G452200.1	Wheat	nucleus	32.47	34.59
KRH46807	Soybean	nucleus	35.88	34.56
KRG99861	Soybean	nucleus	35.61	34.43
TraesCS3D01G412800.1	Wheat	nucleus	32.47	34.39
TraesCS3A01G417300.1	Wheat	nucleus	32.47	34.39
GSMUA_Achr3P32440_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	9.28	33.5
CDY15121	Canola	nucleus	30.56	33.33
AT3G24650.1	Thale cress	nucleus	32.61	33.19
GSMUA_Achr8P18070_001	Banana	nucleus	9.28	32.69
Bra013248.1-P	Field mustard	nucleus	31.38	32.08
CDX93029	Canola	nucleus	31.38	32.03
GSMUA_Achr3P00120_001	Banana	nucleus	7.5	30.39
GSMUA_Achr5P27930_001	Banana	nucleus	8.19	10.34
GSMUA_Achr8P03800_001	Banana	nucleus	9.69	8.69
GSMUA_Achr4P23790_001	Banana	nucleus	9.69	7.99
GSMUA_Achr7P00120_001	Banana	nucleus, plastid	9.28	7.63
GSMUA_Achr8P01750_001	Banana	nucleus	8.87	7.58
GSMUA_Achr5P27940_001	Banana	nucleus	0.14	0.45

Protein Annotations

MapMan:15.5.5.5	Gene3D:2.40.330.10	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr7G23040_001	EnsemblPlants:GSMUA_Achr7P23040_001	EnsemblPlants:GSMUA_Achr7T23040_001	InterPro:IPR003340	InterPro:IPR015300
UniProt:M0TJZ0	PFAM:PF02362	PFscan:PS50863	PANTHER:PTHR31140	PANTHER:PTHR31140:SF1	SMART:SM01019
SUPFAM:SSF101936	UniParc:UPI000296F6DC	SEG:seg	:	:	:

Description

Putative Regulatory protein viviparous-1 [Source:GMGC_GENE;Acc:GSMUA_Achr7G23040_001]

Coordinates

chr7:+:25400635..25406203

Molecular Weight (calculated)

81687.3 Da

IEP (calculated)

8.926

GRAVY (calculated)

-0.678

Length

733 amino acids

Sequence
(BLAST)

001: MKIWKRERER EKESGRKGRF PFYDYCFLPP RRRQQLLLLS LQIYLRAHAR ALLLHLRRRL LSAVRFILVH VSSLQSTIME RKSKRKQREE LRVPKEVDKT
101: MADHEVEEEE KMLAGFDAAG DHPGVDEIVL DMDGEDLIFA EDTFPSLPDF SCLSSPSPST LHAKNTVLSP CSSTSSTSSC WSFLQVPYGG RVADSSEFSS
201: DGLDILGDID LLDLSIDPWE PCSLFHAGES STAVDNGSEA IVDRAMQPCQ VAEEASSEGH GEGVQQRQQL EDTSSDELAR VFLDWLRSNK DSISAEDLRS
301: IKLKRATIEC ADRRLGRTKH GRMQLLKLIL TWVQNSHLQR KRHRPTSSDD HQPRPFPNNC NCSTADQNPA AWNPNSTDPA AGSTHPSLLA AYGIANGEMA
401: YPGATAPYPY PHSCGTSSVV VNSQPFSPTL DFVDPNAGPW SSQLASALPS MVPPQYSGGY ANQFLGHPMY HQGQHLPGLA SATKEARKKR MARQRRLASL
501: HHHRNHHNQS HLQHAHPHLG STEGAARNWA FWTNSSSSSH KRNHLAETQT PPPAAQPQRR SPHGAASTSE KRQGWKGEKN LKFLLQKVLK QSDVGSLGRI
601: VLPKKEAETH LPELGARDGI SIPMEDIGTS QVWNMRYRFW PNNKSRMYLL ENTGDFVRSN GLQEGDFIVI YSDVKCGKYM IRGVKVRQPA EAAGAPSGMN
701: AEKKAHRRRN GLEKTGGADK MRGNSIIHGD VSP

Best Arabidopsis Sequence Match ( AT3G24650.1 )
(BLAST)

001: MKSLHVAANA GDLAEDCGIL GGDADDTVLM DGIDEVGREI WLDDHGGDNN HVHGHQDDDL IVHHDPSIFY GDLPTLPDFP CMSSSSSSST SPAPVNAIVS
101: SASSSSAASS STSSAASWAI LRSDGEDPTP NQNQYASGNC DDSSGALQST ASMEIPLDSS QGFGCGEGGG DCIDMMETFG YMDLLDSNEF FDTSAIFSQD
201: DDTQNPNLMD QTLERQEDQV VVPMMENNSG GDMQMMNSSL EQDDDLAAVF LEWLKNNKET VSAEDLRKVK IKKATIESAA RRLGGGKEAM KQLLKLILEW
301: VQTNHLQRRR TTTTTTNLSY QQSFQQDPFQ NPNPNNNNLI PPSDQTCFSP STWVPPPPQQ QAFVSDPGFG YMPAPNYPPQ PEFLPLLESP PSWPPPPQSG
401: PMPHQQFPMP PTSQYNQFGD PTGFNGYNMN PYQYPYVPAG QMRDQRLLRL CSSATKEARK KRMARQRRFL SHHHRHNNNN NNNNNNQQNQ TQIGETCAAV
501: APQLNPVATT ATGGTWMYWP NVPAVPPQLP PVMETQLPTM DRAGSASAMP RQQVVPDRRQ GWKPEKNLRF LLQKVLKQSD VGNLGRIVLP KKEAETHLPE
601: LEARDGISLA MEDIGTSRVW NMRYRFWPNN KSRMYLLENT GDFVKTNGLQ EGDFIVIYSD VKCGKYLIRG VKVRQPSGQK PEAPPSSAAT KRQNKSQRNI
701: NNNSPSANVV VASPTSQTVK

Arabidopsis Description

ABI3B3 domain-containing transcription factor ABI3 [Source:UniProtKB/Swiss-Prot;Acc:Q01593]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.