Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P01750_001 | Banana | nucleus | 73.64 | 18.9 |
| GSMUA_Achr8P03800_001 | Banana | nucleus | 41.82 | 11.26 |
| GSMUA_Achr4P23790_001 | Banana | nucleus | 43.64 | 10.8 |
| GSMUA_Achr7P00120_001 | Banana | nucleus, plastid | 43.64 | 10.77 |
| GSMUA_Achr5P27930_001 | Banana | nucleus | 2.73 | 1.03 |
| GSMUA_Achr8P18070_001 | Banana | nucleus | 0.91 | 0.96 |
| GSMUA_Achr3P00120_001 | Banana | nucleus | 0.45 | 0.55 |
| GSMUA_Achr3P32440_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 0.45 | 0.49 |
| GSMUA_Achr7P23040_001 | Banana | nucleus | 0.45 | 0.14 |
| GSMUA_AchrUn_... | Banana | nucleus | 0.0 | 0.0 |
| Solyc10g006830.2.1 | Tomato | cytosol, plastid | 0.0 | 0.0 |
| Zm00001d012162_P002 | Maize | mitochondrion | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P27940_001 | EnsemblPlants:GSMUA_Achr5T27940_001 | EnsemblPlantsGene:GSMUA_Achr5G27940_001 | Gene3D:3.30.40.100 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0008270 | InterPro:IPR011124 | InterPro:Znf_CW | PANTHER:PTHR23336 | PANTHER:PTHR23336:SF28 | PFAM:PF07496 |
| PFscan:PS51050 | SEG:seg | UniParc:UPI000294C71D | UniProt:M0T2B8 | MapMan:15.5.5.4 | : |
Description
B3 domain-containing protein Os07g0679700 [Source:GMGC_GENE;Acc:GSMUA_Achr5G27940_001]
Coordinates
chr5:+:28327945..28330966
Molecular Weight (calculated)
24789.8 Da
IEP (calculated)
8.707
GRAVY (calculated)
-0.570
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MVIYIEDLYV HQLDKGSQLI LVVEQDQWVQ CDDCLKWRRL PVDVLLLKWT CADNTWDPKR SSCSAPDELS HKEMQILLRQ YEDLRKQRMS ASFKQTSSDL
101: AASGLDALAA AAVLGDAGNQ ATIPYATTTK HPRHRPGCTC IVCIQPPSGK GPKHDPACTC NVCMTVKRRF KTLMMRKKKR QSEREEAEAH KKLAWGSKEE
201: IEGSSSSPKG AHRLELPSRV
101: AASGLDALAA AAVLGDAGNQ ATIPYATTTK HPRHRPGCTC IVCIQPPSGK GPKHDPACTC NVCMTVKRRF KTLMMRKKKR QSEREEAEAH KKLAWGSKEE
201: IEGSSSSPKG AHRLELPSRV
001: MFEVKMGSKM CMNASCGTTS TVEWKKGWPL RSGLLADLCY RCGSAYESSL FCEQFHKDQS GWRECYLCSK RLHCGCIASK VTIELMDYGG VGCSTCACCH
101: QLNLNTRGEN PGVFSRLPMK TLADRQHVNG ESGGRNEGDL FSQPLVMGGD KREEFMPHRG FGKLMSPEST TTGHRLDAAG EMHESSPLQP SLNMGLAVNP
201: FSPSFATEAV EGMKHISPSQ SNMVHCSASN ILQKPSRPAI STPPVASKSA QARIGRPPVE GRGRGHLLPR YWPKYTDKEV QQISGNLNLN IVPLFEKTLS
301: ASDAGRIGRL VLPKACAEAY FPPISQSEGI PLKIQDVRGR EWTFQFRYWP NNNSRMYVLE GVTPCIQSMM LQAGDTVTFS RVDPGGKLIM GSRKAANAGD
401: MQGCGLTNGT STEDTSSSGV TENPPSINGS SCISLIPKEL NGMPENLNSE TNGGRIGDDP TRVKEKKRTR TIGAKNKRLL LHSEESMELR LTWEEAQDLL
501: RPSPSVKPTI VVIEEQEIEE YDEPPVFGKR TIVTTKPSGE QERWATCDDC SKWRRLPVDA LLSFKWTCID NVWDVSRCSC SAPEESLKEL ENVLKVGREH
601: KKRRTGESQA AKSQQEPCGL DALASAAVLG DTIGEPEVAT TTRHPRHRAG CSCIVCIQPP SGKGRHKPTC GCTVCSTVKR RFKTLMMRRK KKQLERDVTA
701: AEDKKKKDME LAESDKSKEE KEVNTARIDL NSDPYNKEDV EAVAVEKEES RKRAIGQCSG VVAQDASDVL GVTELEGEGK NVREEPRVSS
101: QLNLNTRGEN PGVFSRLPMK TLADRQHVNG ESGGRNEGDL FSQPLVMGGD KREEFMPHRG FGKLMSPEST TTGHRLDAAG EMHESSPLQP SLNMGLAVNP
201: FSPSFATEAV EGMKHISPSQ SNMVHCSASN ILQKPSRPAI STPPVASKSA QARIGRPPVE GRGRGHLLPR YWPKYTDKEV QQISGNLNLN IVPLFEKTLS
301: ASDAGRIGRL VLPKACAEAY FPPISQSEGI PLKIQDVRGR EWTFQFRYWP NNNSRMYVLE GVTPCIQSMM LQAGDTVTFS RVDPGGKLIM GSRKAANAGD
401: MQGCGLTNGT STEDTSSSGV TENPPSINGS SCISLIPKEL NGMPENLNSE TNGGRIGDDP TRVKEKKRTR TIGAKNKRLL LHSEESMELR LTWEEAQDLL
501: RPSPSVKPTI VVIEEQEIEE YDEPPVFGKR TIVTTKPSGE QERWATCDDC SKWRRLPVDA LLSFKWTCID NVWDVSRCSC SAPEESLKEL ENVLKVGREH
601: KKRRTGESQA AKSQQEPCGL DALASAAVLG DTIGEPEVAT TTRHPRHRAG CSCIVCIQPP SGKGRHKPTC GCTVCSTVKR RFKTLMMRRK KKQLERDVTA
701: AEDKKKKDME LAESDKSKEE KEVNTARIDL NSDPYNKEDV EAVAVEKEES RKRAIGQCSG VVAQDASDVL GVTELEGEGK NVREEPRVSS
Arabidopsis Description
VAL1B3 domain-containing transcription repressor VAL1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4L5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.