Factsheet for GSMUA_AchrUn_randomP18520_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr2P00920_001
GSMUA_Achr2P04570_001
GSMUA_Achr2P12610_001
GSMUA_Achr4P09670_001
GSMUA_Achr4P17760_001
GSMUA_Achr4P28530_001
GSMUA_Achr7P07650_001
GSMUA_Achr8P24580_001
GSMUA_Achr9P19550_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24650.1	GSMUA_Achr4P17760_001	AT1G08780.1	10743655
AT3G24650.1	GSMUA_Achr2P00920_001	AT3G22320.1	10743655
AT3G24650.1	GSMUA_AchrUn_...	AT3G22320.1	10743655
AT3G24650.1	GSMUA_Achr10P...	AT3G54620.1	12657652
AT3G24650.1	GSMUA_Achr2P12610_001	AT3G54620.1	12657652
AT3G24650.1	GSMUA_Achr4P28530_001	AT3G54620.1	12657652
AT3G24650.1	GSMUA_Achr7P07650_001	AT3G54620.1	12657652
AT3G24650.1	GSMUA_Achr4P09670_001	AT5G20910.1	10743655
AT3G24650.1	GSMUA_Achr8P24580_001	AT5G20910.1	10743655
AT3G24650.1	GSMUA_Achr10P...	AT5G61380.1	10743655
AT3G24650.1	GSMUA_Achr2P04570_001	AT5G61380.1	10743655
AT3G24650.1	GSMUA_Achr9P19550_001	AT5G61380.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P23040_001	Banana	nucleus	66.22	61.26
Zm00001d042396_P003	Maize	nucleus	38.35	37.63
OQU89229	Sorghum	nucleus	22.12	37.31
PGSC0003DMT400051746	Potato	nucleus	31.86	37.24
VIT_07s0005g05400.t01	Wine grape	nucleus	40.12	37.11
EES04085	Sorghum	nucleus	38.2	36.95
Solyc06g083590.2.1	Tomato	nucleus	30.83	36.1
CDY15121	Canola	nucleus	35.1	35.42
PGSC0003DMT400051934	Potato	nucleus	32.3	35.32
Solyc06g083600.1.1	Tomato	nucleus	31.71	34.68
HORVU3Hr1G092690.2	Barley	nucleus	34.81	34.6
AT3G24650.1	Thale cress	nucleus	36.73	34.58
Os01t0911700-02	Rice	nucleus	36.87	34.39
TraesCS3B01G452200.1	Wheat	nucleus	34.81	34.3
TraesCS3A01G417300.1	Wheat	nucleus	34.81	34.1
TraesCS3D01G412800.1	Wheat	nucleus	34.81	34.1
GSMUA_Achr3P32440_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	10.18	33.99
Bra013248.1-P	Field mustard	nucleus	35.69	33.75
CDX93029	Canola	nucleus	35.69	33.7
KRH46807	Soybean	nucleus	37.61	33.51
KRG99861	Soybean	nucleus	37.17	33.25
GSMUA_Achr8P18070_001	Banana	nucleus	10.18	33.17
GSMUA_Achr3P00120_001	Banana	nucleus	7.96	29.83
GSMUA_Achr5P27930_001	Banana	nucleus	9.14	10.69
GSMUA_Achr8P03800_001	Banana	nucleus	11.06	9.18
GSMUA_Achr4P23790_001	Banana	nucleus	11.21	8.55
GSMUA_Achr7P00120_001	Banana	nucleus, plastid	10.62	8.08
GSMUA_Achr8P01750_001	Banana	nucleus	9.59	7.58
GSMUA_Achr5P27940_001	Banana	nucleus	0.0	0.0

Protein Annotations

MapMan:15.5.5.5	Gene3D:2.40.330.10	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:GSMUA_AchrUn_randomG18520_001	EnsemblPlants:GSMUA_AchrUn_randomP18520_001	EnsemblPlants:GSMUA_AchrUn_randomT18520_001	InterPro:IPR003340	InterPro:IPR015300
UniProt:M0UAB1	PFAM:PF02362	PFscan:PS50863	PANTHER:PTHR31140	PANTHER:PTHR31140:SF1	SMART:SM01019
SUPFAM:SSF101936	UniParc:UPI0002957F31	SEG:seg	:	:	:

Description

Putative Regulatory protein viviparous-1 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG18520_001]

Coordinates

chrchrUn_random:-:88731876..88734669

Molecular Weight (calculated)

75041.4 Da

IEP (calculated)

6.712

GRAVY (calculated)

-0.749

Length

678 amino acids

Sequence
(BLAST)

001: MPSSCYIHSG WKWFLINPCE IGLENKISQT VECESRRKQG DVVFASDEVE EAMADHKVEG EEKVLGVGCG GDTAAGVDDI VLNIDGEDLI FSEDTFPCLP
101: DFPCLSSPSA TPSPSSASTL HAKNAVLSSC SSASSSSSSS SSSSSWSFLQ SSEFADGLDI LGDIDLFDLS IDPWDPPSLF HADEAKEGRL HGHGEGVPQQ
201: AQEEESSEEL ARIFLEWLRS NKDSISPEDL RSIKLKRATI ECAARRLGRT KQGRTQLLKL ILTWVQNNHL QRKRHRLPYS YDHQPRPFPI SPNPNQLDYN
301: CNPWSPYSMD PSTAATHPAL LSAYAGGGNG EMGYPSATAN PYPYHHSSST LPQFAPYPGT SASHPLSMAP PQYSGGMTNQ FLGHPMYHQG QRLPGTTSAT
401: KEARKKRMAR QRRFSSLHQH RNHNQPLHLQ HAHHPVGSTE GANGSSHSNT RNWGFWTSMS SSSHQMNHMA EAQNASNMQQ TPPPPAAQLP QRPQLTTAST
501: SEKRQGEKNL KFLLQKVLKQ SDVGSLGRIV LPKKEAETHL PELDARDGIS IPMEDIGTSQ VWNMRYRFWP NNKSRMYLLE NTGDFVRSNG LQEGDFIVIY
601: SDVKCGKYMI RGVKVRQPVE ARAPSSRNTG KAHQRRNGLE KMAGASKMKG RSLIHDDADK YDDDDDDDDD DVPPSMHG

Best Arabidopsis Sequence Match ( AT3G24650.1 )
(BLAST)

001: MKSLHVAANA GDLAEDCGIL GGDADDTVLM DGIDEVGREI WLDDHGGDNN HVHGHQDDDL IVHHDPSIFY GDLPTLPDFP CMSSSSSSST SPAPVNAIVS
101: SASSSSAASS STSSAASWAI LRSDGEDPTP NQNQYASGNC DDSSGALQST ASMEIPLDSS QGFGCGEGGG DCIDMMETFG YMDLLDSNEF FDTSAIFSQD
201: DDTQNPNLMD QTLERQEDQV VVPMMENNSG GDMQMMNSSL EQDDDLAAVF LEWLKNNKET VSAEDLRKVK IKKATIESAA RRLGGGKEAM KQLLKLILEW
301: VQTNHLQRRR TTTTTTNLSY QQSFQQDPFQ NPNPNNNNLI PPSDQTCFSP STWVPPPPQQ QAFVSDPGFG YMPAPNYPPQ PEFLPLLESP PSWPPPPQSG
401: PMPHQQFPMP PTSQYNQFGD PTGFNGYNMN PYQYPYVPAG QMRDQRLLRL CSSATKEARK KRMARQRRFL SHHHRHNNNN NNNNNNQQNQ TQIGETCAAV
501: APQLNPVATT ATGGTWMYWP NVPAVPPQLP PVMETQLPTM DRAGSASAMP RQQVVPDRRQ GWKPEKNLRF LLQKVLKQSD VGNLGRIVLP KKEAETHLPE
601: LEARDGISLA MEDIGTSRVW NMRYRFWPNN KSRMYLLENT GDFVKTNGLQ EGDFIVIYSD VKCGKYLIRG VKVRQPSGQK PEAPPSSAAT KRQNKSQRNI
701: NNNSPSANVV VASPTSQTVK

Arabidopsis Description

ABI3B3 domain-containing transcription factor ABI3 [Source:UniProtKB/Swiss-Prot;Acc:Q01593]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.