Factsheet for GSMUA_Achr10P06310_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P01580_001
GSMUA_Achr1P19000_001
GSMUA_Achr3P21850_001
GSMUA_Achr4P04970_001
GSMUA_Achr4P05170_001
GSMUA_Achr4P24050_001
GSMUA_Achr5P17690_001
GSMUA_Achr6P17510_001
GSMUA_Achr6P24180_001
GSMUA_Achr7P11200_001
GSMUA_Achr7P23040_001
GSMUA_Achr8P08440_001
GSMUA_Achr9P24280_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61380.1	GSMUA_Achr10P...	AT1G33470.1	21798944
AT5G61380.1	GSMUA_Achr3P21850_001	AT1G33470.1	21798944
AT5G61380.1	GSMUA_Achr6P17510_001	AT1G33470.1	21798944
AT5G61380.1	GSMUA_Achr6P24180_001	AT1G33470.1	21798944
AT5G61380.1	GSMUA_Achr8P08440_001	AT1G33470.1	21798944
AT5G61380.1	GSMUA_Achr7P11200_001	AT1G68050.1	14654842
AT5G61380.1	GSMUA_Achr5P17690_001	AT2G33410.1	21798944
AT5G61380.1	GSMUA_Achr1P19000_001	AT2G46970.1	11828029
AT5G61380.1	GSMUA_Achr1P01580_001	AT3G16980.1	21798944
AT5G61380.1	GSMUA_Achr4P24050_001	AT3G16980.1	21798944
AT5G61380.1	GSMUA_Achr7P23040_001	AT3G24650.1	10743655
AT5G61380.1	GSMUA_AchrUn_...	AT3G24650.1	10743655
AT5G61380.1	GSMUA_Achr4P04970_001	AT5G24470.1	20407420
AT5G61380.1	GSMUA_Achr4P05170_001	AT5G24470.1	20407420
AT5G61380.1	GSMUA_Achr9P24280_001	AT5G24470.1	20407420

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P04570_001	Banana	nucleus	71.03	70.13
GSMUA_Achr9P19550_001	Banana	nucleus	64.21	66.03
EES05438	Sorghum	nucleus	47.42	49.05
Zm00001d017241_P002	Maize	nucleus	46.68	48.94
Os02t0618200-01	Rice	nucleus	46.68	48.84
TraesCS6B01G253900.1	Wheat	nucleus	46.49	48.84
HORVU6Hr1G057630.1	Barley	nucleus	46.68	48.47
VIT_17s0000g06570.t01	Wine grape	nucleus	47.42	46.64
VIT_17s0000g06520.t01	Wine grape	cytosol	13.47	45.91
KRH54582	Soybean	nucleus	46.86	45.52
Zm00001d051114_P001	Maize	nucleus	45.39	45.05
KRH63298	Soybean	nucleus	46.31	44.82
Solyc06g069690.2.1	Tomato	nucleus	41.51	44.82
Solyc03g115770.2.1	Tomato	nucleus	45.57	44.75
TraesCS6D01G207100.2	Wheat	endoplasmic reticulum, nucleus, plastid	46.68	44.7
TraesCS6A01G227900.2	Wheat	endoplasmic reticulum, plasma membrane, plastid	46.13	44.48
PGSC0003DMT400050252	Potato	nucleus	45.2	44.46
PGSC0003DMT400083086	Potato	nucleus	44.1	43.53
KRH56889	Soybean	nucleus	45.94	43.3
CDX87210	Canola	nucleus	39.11	42.32
Bra035933.1-P	Field mustard	nucleus	39.3	41.85
KRH03510	Soybean	nucleus	44.46	41.62
CDY02151	Canola	nucleus	41.33	40.95
Zm00001d003811_P001	Maize	cytosol	23.99	40.37
CDY64140	Canola	nucleus	42.07	39.79
Bra012964.1-P	Field mustard	nucleus	41.14	38.72
Zm00001d018818_P001	Maize	cytosol	21.4	38.16
Zm00001d043140_P001	Maize	cytosol	21.4	38.16
Zm00001d044406_P001	Maize	cytosol	20.66	36.84
VIT_17s0000g06560.t01	Wine grape	plastid	9.23	35.97
AT5G61380.1	Thale cress	nucleus	40.59	35.6
Zm00001d005366_P001	Maize	cytosol	25.83	25.83
GSMUA_Achr9P24280_001	Banana	nucleus	22.88	18.56
GSMUA_Achr4P04970_001	Banana	nucleus	21.22	17.64
GSMUA_Achr2P06760_001	Banana	nucleus	21.22	17.27
GSMUA_Achr9P08940_001	Banana	nucleus	20.3	16.72
GSMUA_Achr8P01990_001	Banana	cytosol, nucleus, plastid	22.51	16.49
GSMUA_AchrUn_...	Banana	nucleus	22.88	16.19
GSMUA_Achr4P05170_001	Banana	nucleus	21.03	14.9
GSMUA_Achr9P04240_001	Banana	nucleus	21.59	14.87

Protein Annotations

MapMan:27.1.3	Gene3D:3.40.50.2300	InterPro:CCT_domain	InterPro:CheY-like_superfamily	GO:GO:0000160	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr10G06310_001	EnsemblPlants:GSMUA_Achr10P06310_001
EnsemblPlants:GSMUA_Achr10T06310_001	InterPro:IPR001789	InterPro:IPR010402	UniProt:M0RFV8	PFAM:PF00072	PFAM:PF06203
PFscan:PS50110	PFscan:PS51017	PANTHER:PTHR43874	PANTHER:PTHR43874:SF1	SMART:SM00448	SUPFAM:SSF52172
InterPro:Sig_transdc_resp-reg_receiver	UniParc:UPI000295D7C5	SEG:seg	:	:	:

Description

Two-component response regulator-like PRR1 [Source:GMGC_GENE;Acc:GSMUA_Achr10G06310_001]

Coordinates

chr10:+:16719989..16723149

Molecular Weight (calculated)

60065.0 Da

IEP (calculated)

5.426

GRAVY (calculated)

-0.567

Length

542 amino acids

Sequence
(BLAST)

001: MGREKGEEEE DEGRRGGNER GCGGDAGGHQ FLDRSKVRIL LCDNDPKSSQ EVLQLLYKCS YQVTSVKSAK RVIDVLNAQG SEIDIILAEV ELPMAKGLKM
101: MKYIARNKEL RHIPIIMMSA QDEVSIVVKC LQLGAADYLV KPLRMNELLN LWTHMWRRRR MLGLTEKDVF SHDLEISLSD PSDVNTSSTI LISDNTDDQL
201: DVVANPELNM SNHPECESNV SPVGPACNND LDDAQYIPRN NDRAVIASGI VSLPKKIEFK VGRSSAFLTY VNSNAPSKIP HLAIDTNSAP SKSLNYEGSP
301: LAGGNMEGYN NKLVQENYTS GNVSVTRENI CNTKDFETLP ECPVPYPSSS TEQNEGTDVS GVPPVFSFPF YYPGVMNQNI MSSPGQTFQG SLNDVQAHPA
401: PAMVPQYAVV PYMPLMPSFP CQPLGTNPQS SHMAAPSMWS SMTSSSTPEV KSGRTERRAA ALVKFRQKRK ERCFDKKIRY AKRKRLAEKR PRVRGQFVKQ
501: VDNVDLSHDI SSGDGDSEDD EADEPTSREL ELISSPEQNA SY

Best Arabidopsis Sequence Match ( AT5G61380.1 )
(BLAST)

001: MDLNGECKGG DGFIDRSRVR ILLCDNDSTS LGEVFTLLSE CSYQVTAVKS ARQVIDALNA EGPDIDIILA EIDLPMAKGM KMLRYITRDK DLRRIPVIMM
101: SRQDEVPVVV KCLKLGAADY LVKPLRTNEL LNLWTHMWRR RRMLGLAEKN MLSYDFDLVG SDQSDPNTNS TNLFSDDTDD RSLRSTNPQR GNLSHQENEW
201: SVATAPVHAR DGGLGADGTA TSSLAVTAIE PPLDHLAGSH HEPMKRNSNP AQFSSAPKKS RLKIGESSAF FTYVKSTVLR TNGQDPPLVD GNGSLHLHRG
301: LAEKFQVVAS EGINNTKQAR RATPKSTVLR TNGQDPPLVN GNGSHHLHRG AAEKFQVVAS EGINNTKQAH RSRGTEQYHS QGETLQNGAS YPHSLERSRT
401: LPTSMESHGR NYQEGNMNIP QVAMNRSKDS SQVDGSGFSA PNAYPYYMHG VMNQVMMQSA AMMPQYGHQI PHCQPNHPNG MTGYPYYHHP MNTSLQHSQM
501: SLQNGQMSMV HHSWSPAGNP PSNEVRVNKL DRREEALLKF RRKRNQRCFD KKIRYVNRKR LAERRPRVKG QFVRKMNGVN VDLNGQPDSA DYDDEEEEEE
601: EEEEENRDSS PQDDALGT

Arabidopsis Description

APRR1Two-component response regulator-like APRR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.