Factsheet for VIT_17s0000g06560.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g06520.t01	Wine grape	cytosol	47.48	41.51
VIT_08s0040g03120.t01	Wine grape	nucleus	22.3	14.69
TraesCS6B01G253900.1	Wheat	nucleus	38.85	10.47
Os02t0618200-01	Rice	nucleus	38.85	10.42
HORVU6Hr1G057630.1	Barley	nucleus	38.85	10.34
VIT_17s0000g06570.t01	Wine grape	nucleus	41.01	10.34
Zm00001d017241_P002	Maize	nucleus	36.69	9.86
EES05438	Sorghum	nucleus	36.69	9.73
TraesCS6A01G227900.2	Wheat	endoplasmic reticulum, plasma membrane, plastid	38.85	9.61
TraesCS6D01G207100.2	Wheat	endoplasmic reticulum, nucleus, plastid	38.85	9.54
GSMUA_Achr10P...	Banana	nucleus	35.97	9.23
GSMUA_Achr9P19550_001	Banana	nucleus	34.53	9.11
GSMUA_Achr2P04570_001	Banana	nucleus	35.97	9.11
Zm00001d051114_P001	Maize	nucleus	35.25	8.97
VIT_06s0004g03650.t01	Wine grape	nucleus	23.02	6.64
VIT_15s0048g02540.t01	Wine grape	nucleus	25.18	5.46
VIT_16s0098g00900.t01	Wine grape	nucleus	23.02	4.65
VIT_13s0067g03390.t01	Wine grape	nucleus	23.74	4.29
Zm00001d003811_P001	Maize	cytosol	8.63	3.73
VIT_06s0004g03660.t01	Wine grape	nucleus	0.72	0.97
Zm00001d018818_P001	Maize	cytosol	1.44	0.66
Zm00001d043140_P001	Maize	cytosol	1.44	0.66
Zm00001d005366_P001	Maize	cytosol	1.44	0.37
Zm00001d044406_P001	Maize	cytosol	0.72	0.33

Protein Annotations

Gene3D:3.40.50.2300	MapMan:35.1	ProteinID:CBI15190	ProteinID:CBI15190.3	InterPro:CheY-like_superfamily	UniProt:D7SI80
EMBL:FN594950	GO:GO:0000160	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	InterPro:IPR001789	PFscan:PS50110	PANTHER:PTHR43874
PANTHER:PTHR43874:SF35	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	UniParc:UPI0001BE0B49	ArrayExpress:VIT_17s0000g06560	EnsemblPlantsGene:VIT_17s0000g06560
EnsemblPlants:VIT_17s0000g06560.t01	:	:	:	:	:

Description

No Description!

Coordinates

chr17:+:7096186..7098427

Molecular Weight (calculated)

15372.9 Da

IEP (calculated)

7.682

GRAVY (calculated)

0.204

Length

139 amino acids

Sequence
(BLAST)

001: MPCYGLQPLH DGSCHYFLHM PAKSDASGNG NTNKRICAFV NRSKLKILLC DANVNNCREV ATLLRGCSYQ MTSVGSTREV IYVLNCEGAS IDIVLAEADL
101: PMANSMKILK YITQDQELRC IPVMSMFVLT FILPFSIAS

Best Arabidopsis Sequence Match ( AT5G61380.1 )
(BLAST)

001: MDLNGECKGG DGFIDRSRVR ILLCDNDSTS LGEVFTLLSE CSYQVTAVKS ARQVIDALNA EGPDIDIILA EIDLPMAKGM KMLRYITRDK DLRRIPVIMM
101: SRQDEVPVVV KCLKLGAADY LVKPLRTNEL LNLWTHMWRR RRMLGLAEKN MLSYDFDLVG SDQSDPNTNS TNLFSDDTDD RSLRSTNPQR GNLSHQENEW
201: SVATAPVHAR DGGLGADGTA TSSLAVTAIE PPLDHLAGSH HEPMKRNSNP AQFSSAPKKS RLKIGESSAF FTYVKSTVLR TNGQDPPLVD GNGSLHLHRG
301: LAEKFQVVAS EGINNTKQAR RATPKSTVLR TNGQDPPLVN GNGSHHLHRG AAEKFQVVAS EGINNTKQAH RSRGTEQYHS QGETLQNGAS YPHSLERSRT
401: LPTSMESHGR NYQEGNMNIP QVAMNRSKDS SQVDGSGFSA PNAYPYYMHG VMNQVMMQSA AMMPQYGHQI PHCQPNHPNG MTGYPYYHHP MNTSLQHSQM
501: SLQNGQMSMV HHSWSPAGNP PSNEVRVNKL DRREEALLKF RRKRNQRCFD KKIRYVNRKR LAERRPRVKG QFVRKMNGVN VDLNGQPDSA DYDDEEEEEE
601: EEEEENRDSS PQDDALGT

Arabidopsis Description

APRR1Two-component response regulator-like APRR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.