Factsheet for VIT_17s0000g06520.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g06560.t01	Wine grape	plastid	41.51	47.48
VIT_08s0040g03120.t01	Wine grape	nucleus	25.79	19.43
VIT_17s0000g06570.t01	Wine grape	nucleus	50.31	14.52
TraesCS6B01G253900.1	Wheat	nucleus	45.91	14.15
HORVU6Hr1G057630.1	Barley	nucleus	45.91	13.98
Zm00001d017241_P002	Maize	nucleus	45.28	13.93
EES05438	Sorghum	nucleus	45.28	13.74
Os02t0618200-01	Rice	nucleus	44.65	13.71
GSMUA_Achr10P...	Banana	nucleus	45.91	13.47
GSMUA_Achr9P19550_001	Banana	nucleus	44.03	13.28
TraesCS6D01G207100.2	Wheat	endoplasmic reticulum, nucleus, plastid	46.54	13.07
Zm00001d051114_P001	Maize	nucleus	44.65	13.0
TraesCS6A01G227900.2	Wheat	endoplasmic reticulum, plasma membrane, plastid	45.28	12.81
GSMUA_Achr2P04570_001	Banana	nucleus	43.4	12.57
Zm00001d003811_P001	Maize	cytosol	20.75	10.25
VIT_06s0004g03650.t01	Wine grape	nucleus	27.04	8.92
VIT_15s0048g02540.t01	Wine grape	nucleus	32.08	7.96
Zm00001d018818_P001	Maize	cytosol	13.21	6.91
Zm00001d043140_P001	Maize	cytosol	13.21	6.91
Zm00001d044406_P001	Maize	cytosol	13.21	6.91
VIT_16s0098g00900.t01	Wine grape	nucleus	27.67	6.4
VIT_13s0067g03390.t01	Wine grape	nucleus	28.3	5.85
Zm00001d005366_P001	Maize	cytosol	13.84	4.06
VIT_06s0004g03660.t01	Wine grape	nucleus	1.26	1.94

Protein Annotations

EntrezGene:100255408	wikigene:100255408	Gene3D:3.40.50.2300	MapMan:35.1	EMBL:AM425046	ProteinID:CAN66659
ProteinID:CAN66659.1	ProteinID:CBI15194	ProteinID:CBI15194.3	InterPro:CheY-like_superfamily	UniProt:D7SI84	EMBL:FN594950
GO:GO:0000160	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009987	InterPro:IPR001789	EntrezGene:LOC100255408	wikigene:LOC100255408	PFAM:PF00072
PFscan:PS50110	PANTHER:PTHR43874	PANTHER:PTHR43874:SF35	SMART:SM00448	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver
UniParc:UPI0001BE0B4D	ArrayExpress:VIT_17s0000g06520	EnsemblPlantsGene:VIT_17s0000g06520	EnsemblPlants:VIT_17s0000g06520.t01	RefSeq:XP_002284703	RefSeq:XP_002284703.1

Description

No Description!

Coordinates

chr17:+:7067454..7068641

Molecular Weight (calculated)

17325.2 Da

IEP (calculated)

5.711

GRAVY (calculated)

-0.004

Length

159 amino acids

Sequence
(BLAST)

001: MDKGKQIVTG KSDAGVSGST NKKIRALIDR SKLRILLCDT NAGSCKEVAS LLKECSYQGS TGEAIHVLSS EGPSIDIVLA ELDLPMANCL KMLKYITEDQ
101: ELRCIPVIML VTEDKISMIA NCLRYGAVDY LLTPLGINEL LNLSIHMESK AHAPTSREE

Best Arabidopsis Sequence Match ( AT5G61380.1 )
(BLAST)

001: MDLNGECKGG DGFIDRSRVR ILLCDNDSTS LGEVFTLLSE CSYQVTAVKS ARQVIDALNA EGPDIDIILA EIDLPMAKGM KMLRYITRDK DLRRIPVIMM
101: SRQDEVPVVV KCLKLGAADY LVKPLRTNEL LNLWTHMWRR RRMLGLAEKN MLSYDFDLVG SDQSDPNTNS TNLFSDDTDD RSLRSTNPQR GNLSHQENEW
201: SVATAPVHAR DGGLGADGTA TSSLAVTAIE PPLDHLAGSH HEPMKRNSNP AQFSSAPKKS RLKIGESSAF FTYVKSTVLR TNGQDPPLVD GNGSLHLHRG
301: LAEKFQVVAS EGINNTKQAR RATPKSTVLR TNGQDPPLVN GNGSHHLHRG AAEKFQVVAS EGINNTKQAH RSRGTEQYHS QGETLQNGAS YPHSLERSRT
401: LPTSMESHGR NYQEGNMNIP QVAMNRSKDS SQVDGSGFSA PNAYPYYMHG VMNQVMMQSA AMMPQYGHQI PHCQPNHPNG MTGYPYYHHP MNTSLQHSQM
501: SLQNGQMSMV HHSWSPAGNP PSNEVRVNKL DRREEALLKF RRKRNQRCFD KKIRYVNRKR LAERRPRVKG QFVRKMNGVN VDLNGQPDSA DYDDEEEEEE
601: EEEEENRDSS PQDDALGT

Arabidopsis Description

APRR1Two-component response regulator-like APRR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.