Factsheet for HORVU6Hr1G057630.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G017900.1
HORVU1Hr1G039790.1
HORVU2Hr1G031050.2
HORVU2Hr1G031100.1
HORVU3Hr1G092690.2
HORVU3Hr1G110370.1
HORVU5Hr1G013420.1
HORVU5Hr1G081620.4

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61380.1	HORVU3Hr1G110370.1	AT1G33470.1	21798944
AT5G61380.1	HORVU1Hr1G039790.1	AT2G33410.1	21798944
AT5G61380.1	HORVU1Hr1G017900.1	AT2G46970.1	11828029
AT5G61380.1	HORVU2Hr1G031050.2	AT3G16980.1	21798944
AT5G61380.1	HORVU2Hr1G031100.1	AT3G16980.1	21798944
AT5G61380.1	HORVU5Hr1G013420.1	AT3G16980.1	21798944
AT5G61380.1	HORVU3Hr1G092690.2	AT3G24650.1	10743655
AT5G61380.1	HORVU5Hr1G081620.4	AT5G24470.1	20407420

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G253900.1	Wheat	nucleus	92.53	93.6
TraesCS6D01G207100.2	Wheat	endoplasmic reticulum, nucleus, plastid	93.3	86.04
TraesCS6A01G227900.2	Wheat	endoplasmic reticulum, plasma membrane, plastid	92.34	85.77
Os02t0618200-01	Rice	nucleus	75.67	76.25
EES05438	Sorghum	nucleus	76.25	75.95
Zm00001d017241_P002	Maize	nucleus	72.41	73.11
Zm00001d051114_P001	Maize	nucleus	72.03	68.86
Zm00001d003811_P001	Maize	cytosol	41.0	66.46
Zm00001d043140_P001	Maize	cytosol	38.31	65.79
Zm00001d018818_P001	Maize	cytosol	38.31	65.79
Zm00001d044406_P001	Maize	cytosol	37.74	64.8
GSMUA_Achr10P...	Banana	nucleus	48.47	46.68
GSMUA_Achr2P04570_001	Banana	nucleus	48.47	46.08
VIT_17s0000g06520.t01	Wine grape	cytosol	13.98	45.91
GSMUA_Achr9P19550_001	Banana	nucleus	45.79	45.35
KRH63298	Soybean	nucleus	46.93	43.75
KRH54582	Soybean	nucleus	46.74	43.73
Solyc06g069690.2.1	Tomato	nucleus	40.8	42.43
VIT_17s0000g06570.t01	Wine grape	nucleus	44.44	42.11
KRH56889	Soybean	nucleus	46.36	42.09
Zm00001d005366_P001	Maize	cytosol	43.49	41.88
PGSC0003DMT400083086	Potato	nucleus	43.1	40.98
KRH03510	Soybean	nucleus	45.4	40.93
Solyc03g115770.2.1	Tomato	nucleus	43.1	40.76
CDX87210	Canola	nucleus	39.08	40.72
PGSC0003DMT400050252	Potato	nucleus	42.72	40.47
Bra035933.1-P	Field mustard	nucleus	38.7	39.69
VIT_17s0000g06560.t01	Wine grape	plastid	10.34	38.85
CDY02151	Canola	nucleus	39.27	37.48
CDY64140	Canola	nucleus	39.66	36.13
Bra012964.1-P	Field mustard	nucleus	39.46	35.76
AT5G61380.1	Thale cress	nucleus	41.0	34.63
HORVU5Hr1G081620.4	Barley	nucleus	21.65	18.31
HORVU4Hr1G057550.2	Barley	nucleus	23.18	15.94
HORVU2Hr1G013400.34	Barley	cytosol, nucleus, plastid	21.07	15.92
HORVU4Hr1G021000.7	Barley	cytosol, nucleus	16.67	15.16

Protein Annotations

MapMan:27.1.3	Gene3D:3.40.50.2300	ProteinID:AEW48243.1	EMBL:AK370172	InterPro:CCT_domain	InterPro:CheY-like_superfamily
UniProt:F2E201	GO:GO:0000160	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0007154	GO:GO:0007165	GO:GO:0007623	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0010031	GO:GO:0010468	GO:GO:0010629	EnsemblPlantsGene:HORVU6Hr1G057630
EnsemblPlants:HORVU6Hr1G057630.1	InterPro:IPR001789	InterPro:IPR010402	PFAM:PF00072	PFAM:PF06203	PFscan:PS50110
PFscan:PS51017	PANTHER:PTHR43874	PANTHER:PTHR43874:SF1	SMART:SM00448	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver
UniParc:UPI000200787F	SEG:seg	:	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2E201]

Coordinates

chrchr6H:+:374866561..374869556

Molecular Weight (calculated)

58084.9 Da

IEP (calculated)

6.351

GRAVY (calculated)

-0.613

Length

522 amino acids

Sequence
(BLAST)

001: MVGAGEGGRA GGSGAGVGAG AGQPFVDRSK VRILLCDSDP DSSQDVLRLL CNCSYQVTCA KSPRQVINVL NCEGAEIDII LAEVDLPVSK CFKMLKYIGR
101: NKELRHIPII MMSNRDEVSV VVKCLRLGAA EYLVKPLRMN ELLNLWTHVW RRRRMLGLAE KNFFIDNLEL VLSEPSDANT NSTTLLSDET DDKPKGNRNH
201: ETNTSSQYEY ESPATDPPKT DQLENLPSIA EDDDNASSPG GMFSRPIKTN LRIAESSAFL AYVKSSTPAN SSLDTELQRG ANKLDIVDHQ VNFSGSTDRI
301: DTNSSTNIQD EKAFEMPTQY PLVCFSSSNL QLEQRNEGQQ DVSGNPPVYH YPFYYPGMVE HSMALHSVQS FQGNINTAQA HTPPTMLHQY SVYHQSHGAS
401: TMPSYQYNPA GMNVHSSHLS MQNVWSSVSS TPISEERHGH SGRRAAALAK FRQKRKDRCF DKKVRYVNRK KLAETRPRVR GQFVRQASNT SYTDIISTGD
501: DISEYEDDDP SSRDVELVSS PE

Best Arabidopsis Sequence Match ( AT5G61380.1 )
(BLAST)

001: MDLNGECKGG DGFIDRSRVR ILLCDNDSTS LGEVFTLLSE CSYQVTAVKS ARQVIDALNA EGPDIDIILA EIDLPMAKGM KMLRYITRDK DLRRIPVIMM
101: SRQDEVPVVV KCLKLGAADY LVKPLRTNEL LNLWTHMWRR RRMLGLAEKN MLSYDFDLVG SDQSDPNTNS TNLFSDDTDD RSLRSTNPQR GNLSHQENEW
201: SVATAPVHAR DGGLGADGTA TSSLAVTAIE PPLDHLAGSH HEPMKRNSNP AQFSSAPKKS RLKIGESSAF FTYVKSTVLR TNGQDPPLVD GNGSLHLHRG
301: LAEKFQVVAS EGINNTKQAR RATPKSTVLR TNGQDPPLVN GNGSHHLHRG AAEKFQVVAS EGINNTKQAH RSRGTEQYHS QGETLQNGAS YPHSLERSRT
401: LPTSMESHGR NYQEGNMNIP QVAMNRSKDS SQVDGSGFSA PNAYPYYMHG VMNQVMMQSA AMMPQYGHQI PHCQPNHPNG MTGYPYYHHP MNTSLQHSQM
501: SLQNGQMSMV HHSWSPAGNP PSNEVRVNKL DRREEALLKF RRKRNQRCFD KKIRYVNRKR LAERRPRVKG QFVRKMNGVN VDLNGQPDSA DYDDEEEEEE
601: EEEEENRDSS PQDDALGT

Arabidopsis Description

APRR1Two-component response regulator-like APRR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.