Factsheet for TraesCS6B01G253900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G083000.1
TraesCS1A01G150600.1
TraesCS1B01G100400.2
TraesCS1B01G168200.1
TraesCS1D01G084200.1
TraesCS1D01G147600.1
TraesCS2A01G168800.1
TraesCS2B01G195100.1
TraesCS2D01G176400.1
TraesCS3A01G389600.1
TraesCS3A01G417300.1
TraesCS3A01G499100.1
TraesCS3B01G419200.1
TraesCS3B01G452200.1
TraesCS3B01G562300.3
TraesCS3D01G380100.1
TraesCS3D01G412800.1
TraesCS3D01G505900.1
TraesCS4A01G164000.1
TraesCS4B01G157500.1
TraesCS5A01G320300.1
TraesCS5B01G320500.1
TraesCS5D01G326200.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61380.1	TraesCS3A01G389600.1	AT1G33470.1	21798944
AT5G61380.1	TraesCS3A01G499100.1	AT1G33470.1	21798944
AT5G61380.1	TraesCS3B01G419200.1	AT1G33470.1	21798944
AT5G61380.1	TraesCS3B01G562300.3	AT1G33470.1	21798944
AT5G61380.1	TraesCS3D01G380100.1	AT1G33470.1	21798944
AT5G61380.1	TraesCS3D01G505900.1	AT1G33470.1	21798944
AT5G61380.1	TraesCS4A01G164000.1	AT1G68050.1	14654842
AT5G61380.1	TraesCS4B01G157500.1	AT1G68050.1	14654842
AT5G61380.1	TraesCS1A01G150600.1	AT2G33410.1	21798944
AT5G61380.1	TraesCS1B01G168200.1	AT2G33410.1	21798944
AT5G61380.1	TraesCS1D01G147600.1	AT2G33410.1	21798944
AT5G61380.1	TraesCS1A01G083000.1	AT2G46970.1	11828029
AT5G61380.1	TraesCS1B01G100400.2	AT2G46970.1	11828029
AT5G61380.1	TraesCS1D01G084200.1	AT2G46970.1	11828029
AT5G61380.1	TraesCS2A01G168800.1	AT3G16980.1	21798944
AT5G61380.1	TraesCS2B01G195100.1	AT3G16980.1	21798944
AT5G61380.1	TraesCS2D01G176400.1	AT3G16980.1	21798944
AT5G61380.1	TraesCS3A01G417300.1	AT3G24650.1	10743655
AT5G61380.1	TraesCS3B01G452200.1	AT3G24650.1	10743655
AT5G61380.1	TraesCS3D01G412800.1	AT3G24650.1	10743655
AT5G61380.1	TraesCS5A01G320300.1	AT5G24470.1	20407420
AT5G61380.1	TraesCS5B01G320500.1	AT5G24470.1	20407420
AT5G61380.1	TraesCS5D01G326200.3	AT5G24470.1	20407420

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G057630.1	Barley	nucleus	93.6	92.53
TraesCS6A01G227900.2	Wheat	endoplasmic reticulum, plasma membrane, plastid	97.29	89.32
TraesCS6D01G207100.2	Wheat	endoplasmic reticulum, nucleus, plastid	97.67	89.05
Os02t0618200-01	Rice	nucleus	76.74	76.45
EES05438	Sorghum	nucleus	77.33	76.14
Zm00001d017241_P002	Maize	nucleus	73.06	72.92
Zm00001d051114_P001	Maize	nucleus	72.87	68.86
Zm00001d003811_P001	Maize	cytosol	40.89	65.53
Zm00001d043140_P001	Maize	cytosol	38.57	65.46
Zm00001d018818_P001	Maize	cytosol	38.57	65.46
Zm00001d044406_P001	Maize	cytosol	37.79	64.14
GSMUA_Achr10P...	Banana	nucleus	48.84	46.49
VIT_17s0000g06520.t01	Wine grape	cytosol	14.15	45.91
GSMUA_Achr2P04570_001	Banana	nucleus	48.26	45.36
GSMUA_Achr9P19550_001	Banana	nucleus	45.74	44.78
KRH54582	Soybean	nucleus	46.9	43.37
KRH63298	Soybean	nucleus	46.9	43.21
Solyc06g069690.2.1	Tomato	nucleus	41.28	42.43
KRH56889	Soybean	nucleus	47.09	42.26
Zm00001d005366_P001	Maize	cytosol	43.6	41.51
VIT_17s0000g06570.t01	Wine grape	nucleus	44.19	41.38
KRH03510	Soybean	nucleus	46.12	41.11
Solyc03g115770.2.1	Tomato	nucleus	43.8	40.94
CDX87210	Canola	nucleus	39.53	40.72
PGSC0003DMT400050252	Potato	nucleus	43.41	40.65
PGSC0003DMT400083086	Potato	nucleus	43.22	40.62
Bra035933.1-P	Field mustard	nucleus	38.95	39.49
VIT_17s0000g06560.t01	Wine grape	plastid	10.47	38.85
CDY02151	Canola	nucleus	39.73	37.48
CDY64140	Canola	nucleus	40.12	36.13
Bra012964.1-P	Field mustard	nucleus	39.92	35.76
AT5G61380.1	Thale cress	nucleus	41.47	34.63
TraesCS5B01G320500.1	Wheat	nucleus	21.32	18.09
TraesCS4B01G115100.1	Wheat	nucleus	22.09	16.47
TraesCS4B01G198700.1	Wheat	nucleus	22.87	15.57

Protein Annotations

MapMan:27.1.3	Gene3D:3.40.50.2300	InterPro:CCT_domain	InterPro:CheY-like_superfamily	GO:GO:0000160	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0007154	GO:GO:0007165
GO:GO:0007623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0010031
GO:GO:0010468	GO:GO:0010629	InterPro:IPR001789	InterPro:IPR010402	PFAM:PF00072	PFAM:PF06203
PFscan:PS50110	PFscan:PS51017	PANTHER:PTHR43874	PANTHER:PTHR43874:SF1	SMART:SM00448	SUPFAM:SSF52172
InterPro:Sig_transdc_resp-reg_receiver	EnsemblPlantsGene:TraesCS6B01G253900	EnsemblPlants:TraesCS6B01G253900.1	TIGR:cd00156	SEG:seg	:

Description

No Description!

Coordinates

chr6B:+:457168809..457171641

Molecular Weight (calculated)

57630.7 Da

IEP (calculated)

6.717

GRAVY (calculated)

-0.625

Length

516 amino acids

Sequence
(BLAST)

001: MVGAGEGVRA GGSGAGVGGG QPFVDRSKVR ILLCDSDPDS SQDVLRLLCN CSYQVTCAKS PRQVINVLNC EGAEIDIILA EVDLPVSKCF KLLKYIGRNK
101: ELRHIPIIMM SNRDEVSVVV KCLRLGAAEY LVKPLRMNEL LNLWTHVWRR RRMLGLAEKN FFIDNLELVL SEPSDANTNS TTLLSDETDD KPKGNRNHET
201: NISSQHEYES PAMDPPKTDK LENLPSIAED DDKASSPGGM FSRPIKTNLR IAESSAFLAY VKSSTPANNP LDNELQRKGN QIDVMDHQGN FSGATERIDT
301: NSSINIQDEK AFETPVQYPL VCFSSSNLHL EQRNEGQQDV SGNPPVYHYP FYYPGMVEHG MALHSVQSFQ GNINTAQAHT PPTMLHQYNV YHQSHGASMQ
401: SYQYSPAGMN VHSSHLSTQN VWSSVSSTPI PEERHSRSGR RAAALAKFRQ KRKDRCFDKK VRYVNRKKVA ETRPRVRGQF VRQASNTDII STGDDISEYE
501: DDDPSSRDVE LVSSPE

Best Arabidopsis Sequence Match ( AT5G61380.1 )
(BLAST)

001: MDLNGECKGG DGFIDRSRVR ILLCDNDSTS LGEVFTLLSE CSYQVTAVKS ARQVIDALNA EGPDIDIILA EIDLPMAKGM KMLRYITRDK DLRRIPVIMM
101: SRQDEVPVVV KCLKLGAADY LVKPLRTNEL LNLWTHMWRR RRMLGLAEKN MLSYDFDLVG SDQSDPNTNS TNLFSDDTDD RSLRSTNPQR GNLSHQENEW
201: SVATAPVHAR DGGLGADGTA TSSLAVTAIE PPLDHLAGSH HEPMKRNSNP AQFSSAPKKS RLKIGESSAF FTYVKSTVLR TNGQDPPLVD GNGSLHLHRG
301: LAEKFQVVAS EGINNTKQAR RATPKSTVLR TNGQDPPLVN GNGSHHLHRG AAEKFQVVAS EGINNTKQAH RSRGTEQYHS QGETLQNGAS YPHSLERSRT
401: LPTSMESHGR NYQEGNMNIP QVAMNRSKDS SQVDGSGFSA PNAYPYYMHG VMNQVMMQSA AMMPQYGHQI PHCQPNHPNG MTGYPYYHHP MNTSLQHSQM
501: SLQNGQMSMV HHSWSPAGNP PSNEVRVNKL DRREEALLKF RRKRNQRCFD KKIRYVNRKR LAERRPRVKG QFVRKMNGVN VDLNGQPDSA DYDDEEEEEE
601: EEEEENRDSS PQDDALGT

Arabidopsis Description

APRR1Two-component response regulator-like APRR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.