Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G164000.1 | Wheat | cytosol | 97.1 | 96.17 |
| OQU83614 | Sorghum | cytosol | 80.81 | 84.34 |
| Zm00001d007445_P001 | Maize | cytosol | 80.16 | 81.61 |
| Os11t0547000-01 | Rice | cytosol | 82.1 | 80.79 |
| Zm00001d053091_P001 | Maize | cytosol | 80.48 | 80.74 |
| GSMUA_Achr7P11200_001 | Banana | cytosol | 65.0 | 70.45 |
| KRH60424 | Soybean | cytosol | 68.71 | 68.71 |
| VIT_01s0011g05810.t01 | Wine grape | cytosol | 66.94 | 67.37 |
| AT1G68050.1 | Thale cress | cytosol | 66.94 | 67.04 |
| KRH41723 | Soybean | cytosol, extracellular, nucleus | 68.39 | 65.53 |
| PGSC0003DMT400051416 | Potato | cytosol | 66.29 | 64.83 |
| Solyc01g005300.2.1 | Tomato | cytosol | 59.68 | 60.96 |
| TraesCS6B01G149800.1 | Wheat | cytosol | 60.65 | 60.84 |
| TraesCS6B01G426300.1 | Wheat | cytosol | 60.65 | 58.66 |
| TraesCS7B01G197900.1 | Wheat | cytosol | 14.68 | 20.5 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:19.2.2.8.1.4.4 | Gene3D:2.120.10.80 | MapMan:26.1.2.3.1 | Gene3D:3.30.450.20 | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0007275 | GO:GO:0007623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009628 | GO:GO:0009637 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009911 | GO:GO:0009987 |
| GO:GO:0010468 | InterPro:IPR000014 | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:PAS |
| InterPro:PAS-like_dom_sf | PFAM:PF00646 | PFAM:PF13415 | PFAM:PF13418 | PFAM:PF13426 | PFscan:PS50112 |
| PANTHER:PTHR23244 | PANTHER:PTHR23244:SF263 | SUPFAM:SSF117281 | SUPFAM:SSF55785 | SUPFAM:SSF81383 | EnsemblPlantsGene:TraesCS4B01G157500 |
| EnsemblPlants:TraesCS4B01G157500.1 | TIGR:cd00130 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr4B:+:296947345..296950050
Molecular Weight (calculated)
68530.0 Da
IEP (calculated)
6.598
GRAVY (calculated)
-0.232
Length
620 amino acids
Sequence
(BLAST)
(BLAST)
001: MFDGVDRGAV VAIKRMRLCA MEEEVEEGME VDGEEEEERT GGWAWGAPGL GMAGQPGEQR AAAIVVADAV EPDFPVIYVN AAFEAATGYR AHEVLGRNCR
101: FLQFRDPRAQ RRHPLVDPMV VSEMRRCLSD GIEFQGELLN FRKNGAPLNN RLRLIPMHGD DGAFTHIIAI QLFSDANIDP SNISYPVYKP QSSHRLSIQD
201: MNRTSHEHTP KVQCSEYCAI FNLSDEVLAH NILSRLSPRD VASVGSVCTR MHLLTKNDHL RKMVCQNAWG RDVTGRLEMS TKMLGWGRLA RELTTLEAAS
301: WRKFTVGGRV EPSRCNFSAC AVGNRLVLFG GEGVNMQPMS DTFVLNLEAP KPEWCRVKVS ASPPGRWGHT LSWLNGSWLV VFGGYGQQGL LNDVFVLDLD
401: AQTPAWREIA SDGPPLPRSW HSSCTLDGSK LLVSGRGLLS DTFLLDLTKE KPTWKEIPTS WSSRLGHTLS VYGKTKIFMF GGLAKSGSLR LRSSDAYIMD
501: VGEENPQWRQ LATTGFPSVV PPPRLDHVTV SLPCGRIIIF GGSIAGLHSP AELFLLDPAE EKPTWRILNV PGQPPKFAWG HSTCVVGGTR ILVLGGHTGE
601: EWILNELHEL CLSSRPDEDG
101: FLQFRDPRAQ RRHPLVDPMV VSEMRRCLSD GIEFQGELLN FRKNGAPLNN RLRLIPMHGD DGAFTHIIAI QLFSDANIDP SNISYPVYKP QSSHRLSIQD
201: MNRTSHEHTP KVQCSEYCAI FNLSDEVLAH NILSRLSPRD VASVGSVCTR MHLLTKNDHL RKMVCQNAWG RDVTGRLEMS TKMLGWGRLA RELTTLEAAS
301: WRKFTVGGRV EPSRCNFSAC AVGNRLVLFG GEGVNMQPMS DTFVLNLEAP KPEWCRVKVS ASPPGRWGHT LSWLNGSWLV VFGGYGQQGL LNDVFVLDLD
401: AQTPAWREIA SDGPPLPRSW HSSCTLDGSK LLVSGRGLLS DTFLLDLTKE KPTWKEIPTS WSSRLGHTLS VYGKTKIFMF GGLAKSGSLR LRSSDAYIMD
501: VGEENPQWRQ LATTGFPSVV PPPRLDHVTV SLPCGRIIIF GGSIAGLHSP AELFLLDPAE EKPTWRILNV PGQPPKFAWG HSTCVVGGTR ILVLGGHTGE
601: EWILNELHEL CLSSRPDEDG
001: MAREHAIGEA TGKRKKRGRV EEAEEYCNDG IEEQVEDEKL PLEVGMFYYP MTPPSFIVSD ALEPDFPLIY VNRVFEVFTG YRADEVLGRN CRFLQYRDPR
101: AQRRHPLVDP VVVSEIRRCL EEGIEFQGEL LNFRKDGTPL VNRLRLAPIR DDDGTITHVI GIQVFSETTI DLDRVSYPVF KHKQQLDQTS ECLFPSGSPR
201: FKEHHEDFCG ILQLSDEVLA HNILSRLTPR DVASIGSACR RLRQLTKNES VRKMVCQNAW GKEITGTLEI MTKKLRWGRL ARELTTLEAV CWRKFTVGGI
301: VQPSRCNFSA CAVGNRLVLF GGEGVNMQPL DDTFVLNLDA ECPEWQRVRV TSSPPGRWGH TLSCLNGSWL VVFGGCGRQG LLNDVFVLDL DAKHPTWKEV
401: AGGTPPLPRS WHSSCTIEGS KLVVSGGCTD AGVLLSDTFL LDLTTDKPTW KEIPTSWAPP SRLGHSLSVF GRTKILMFGG LANSGHLKLR SGEAYTIDLE
501: DEEPRWRELE CSAFPGVVVP PPRLDHVAVS MPCGRVIIFG GSIAGLHSPS QLFLIDPAEE KPSWRILNVP GKPPKLAWGH STCVVGGTRV LVLGGHTGEE
601: WILNELHELC LASRQDSDL
101: AQRRHPLVDP VVVSEIRRCL EEGIEFQGEL LNFRKDGTPL VNRLRLAPIR DDDGTITHVI GIQVFSETTI DLDRVSYPVF KHKQQLDQTS ECLFPSGSPR
201: FKEHHEDFCG ILQLSDEVLA HNILSRLTPR DVASIGSACR RLRQLTKNES VRKMVCQNAW GKEITGTLEI MTKKLRWGRL ARELTTLEAV CWRKFTVGGI
301: VQPSRCNFSA CAVGNRLVLF GGEGVNMQPL DDTFVLNLDA ECPEWQRVRV TSSPPGRWGH TLSCLNGSWL VVFGGCGRQG LLNDVFVLDL DAKHPTWKEV
401: AGGTPPLPRS WHSSCTIEGS KLVVSGGCTD AGVLLSDTFL LDLTTDKPTW KEIPTSWAPP SRLGHSLSVF GRTKILMFGG LANSGHLKLR SGEAYTIDLE
501: DEEPRWRELE CSAFPGVVVP PPRLDHVAVS MPCGRVIIFG GSIAGLHSPS QLFLIDPAEE KPSWRILNVP GKPPKLAWGH STCVVGGTRV LVLGGHTGEE
601: WILNELHELC LASRQDSDL
Arabidopsis Description
ADO3FKF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8F6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.