Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 1
- plasma membrane 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G118200.2 | Wheat | nucleus | 99.31 | 99.48 |
| TraesCS3A01G116300.1 | Wheat | cytosol, nucleus, plasma membrane | 99.39 | 99.39 |
| HORVU3Hr1G021150.2 | Barley | cytosol | 21.3 | 98.4 |
| HORVU3Hr1G021140.2 | Barley | plastid | 77.49 | 91.61 |
| Os01t0182600-03 | Rice | nucleus | 89.26 | 88.88 |
| KXG31676 | Sorghum | nucleus | 88.31 | 87.78 |
| Zm00001d008826_P078 | Maize | nucleus | 88.14 | 86.13 |
| Zm00001d039589_P136 | Maize | plasma membrane | 87.36 | 85.58 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 42.86 | 79.71 |
| GSMUA_Achr7P09770_001 | Banana | cytosol | 73.59 | 74.82 |
| GSMUA_Achr10P... | Banana | cytosol | 73.94 | 72.93 |
| VIT_18s0157g00020.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 72.21 | 71.28 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, nucleus, plastid | 23.72 | 68.5 |
| Solyc04g071990.2.1 | Tomato | cytosol | 68.92 | 68.21 |
| KRH35085 | Soybean | cytosol, nucleus, plasma membrane | 68.92 | 67.63 |
| KRG91704 | Soybean | cytosol | 68.74 | 67.4 |
| Solyc12g056650.1.1 | Tomato | nucleus | 67.53 | 66.84 |
| Bra024536.1-P | Field mustard | cytosol, nucleus, plasma membrane | 67.71 | 66.78 |
| CDY21388 | Canola | cytosol, nucleus, plasma membrane | 67.62 | 66.7 |
| AT1G22770.1 | Thale cress | cytosol | 67.71 | 66.67 |
| CDY04787 | Canola | cytosol, nucleus, plasma membrane | 67.53 | 66.67 |
| KRH08640 | Soybean | cytosol | 62.94 | 66.45 |
| PGSC0003DMT400048370 | Potato | nucleus, plasma membrane, plastid | 49.7 | 65.01 |
| PGSC0003DMT400002842 | Potato | plastid | 3.12 | 32.14 |
Protein Annotations
| MapMan:26.1.2.3.2 | InterPro:GIGANTEA | GO:GO:0000003 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0007275 |
| GO:GO:0007623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009409 | GO:GO:0009628 |
| GO:GO:0009637 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010218 | GO:GO:0010378 | GO:GO:0042542 |
| GO:GO:0042752 | GO:GO:0048578 | GO:GO:0080167 | GO:GO:2000028 | PRINTS:PR02081 | PANTHER:PTHR36319 |
| EnsemblPlantsGene:TraesCS3B01G135400 | EnsemblPlants:TraesCS3B01G135400.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr3B:+:117925485..117931188
Molecular Weight (calculated)
125999.0 Da
IEP (calculated)
7.063
GRAVY (calculated)
-0.111
Length
1155 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSVSNGKWID GLQFSSLFWP PPHDVQQKQA QILAYVEYFG QFTSDSEQFP EDVAQLIQSC YPSKEKRLVD EVLATFVLHH PEHGHAVVHP ILSRIIDGTL
0101: SYDSHGSPFN SFISLFTQSS EKEYSEQWAL ACGEILRVLT HYNRPIFKVA DCNNTSDQAT ASCSAQEKAN FSPGNEPERK PLRPLSPWIT DILLTAPLGI
0201: RSDYFRWCGG VMGKYAAGGE LKPPTTAYSR GAGKHPQLMP STPRWAVANG AGVILSVCDE EVARYETANL TAAAVPALLL PPPTTPLDEH LVAGLPPLEP
0301: YARLFHRYYA IATPSATQRL LFGLLEAPPS WAPDALDAAV QLVELLRAAE DYATGMRLPK NWLHLHFLRA IGTAMSMRAG IAADTAAALL FRILSQPTLL
0401: FPPLRHAEGV EVQHEPLGGY VSSYKRQLEV PASETTIDAT AQGIASLLCA HGPDVEWRIC TIWEAAYGLL PLNSSAVDLP EIVVAAPLQP PTLSWSLYLP
0501: LLKVFEYLPR GSPSEACLMR IFVATVEAIL RRTFPSETSE SSKRPRSQSK NLAVAELRTM IHSLFVESCA SMNLASRLLF VVLTVCVSHQ ALPGGSKRPT
0601: GSENHSSEEA TEDPRLTNGR NRVKKKQGPV GTFDSYVLAA VCALSCELQL FPILCKSATN SNVKDSIKIL KPGKNNGISN ELQNSISSAI LHTRRILGIL
0701: EALFSLKPSS VGTSWNYSSN EIVAAAMVAA HVSELFRRSR PCLNALSSLK RCKWDAEIST RASSLYHLID LHGKTVSSIV NKAEPLEAHL TFTSVKRDDQ
0801: QHIEENGTSS SGSGNLEKKN ASASHMKNGF SRPLLKCSEE ARRNGNVAST SGKVPATLQA EASDLANFLT MDRNGGYRGS QTLLRSVISE KQELCFSVVS
0901: LLWHKLIASP ETQMSAESTS AHQGWRKVVD ALCDVVSASP AKASTAIVLQ AEKDLQPWIA RDDEEGQKMW RVNQRIVKLI AELMRNHDSP EALIILASAS
1001: DLLLRATDGM LVDGEACTLP QLELLEVTAR AIHLIVEWGD PGVAVADGLS NLLKCRLSPT IRCLSHASAH VRALSMSVLR DILNSGPLGS TKIIQGEQRN
1101: GIQSPNYQCA AANTVNWQAD VERCIDWEAR SRRATGMTLA FLTAAANELG CTLPC
0101: SYDSHGSPFN SFISLFTQSS EKEYSEQWAL ACGEILRVLT HYNRPIFKVA DCNNTSDQAT ASCSAQEKAN FSPGNEPERK PLRPLSPWIT DILLTAPLGI
0201: RSDYFRWCGG VMGKYAAGGE LKPPTTAYSR GAGKHPQLMP STPRWAVANG AGVILSVCDE EVARYETANL TAAAVPALLL PPPTTPLDEH LVAGLPPLEP
0301: YARLFHRYYA IATPSATQRL LFGLLEAPPS WAPDALDAAV QLVELLRAAE DYATGMRLPK NWLHLHFLRA IGTAMSMRAG IAADTAAALL FRILSQPTLL
0401: FPPLRHAEGV EVQHEPLGGY VSSYKRQLEV PASETTIDAT AQGIASLLCA HGPDVEWRIC TIWEAAYGLL PLNSSAVDLP EIVVAAPLQP PTLSWSLYLP
0501: LLKVFEYLPR GSPSEACLMR IFVATVEAIL RRTFPSETSE SSKRPRSQSK NLAVAELRTM IHSLFVESCA SMNLASRLLF VVLTVCVSHQ ALPGGSKRPT
0601: GSENHSSEEA TEDPRLTNGR NRVKKKQGPV GTFDSYVLAA VCALSCELQL FPILCKSATN SNVKDSIKIL KPGKNNGISN ELQNSISSAI LHTRRILGIL
0701: EALFSLKPSS VGTSWNYSSN EIVAAAMVAA HVSELFRRSR PCLNALSSLK RCKWDAEIST RASSLYHLID LHGKTVSSIV NKAEPLEAHL TFTSVKRDDQ
0801: QHIEENGTSS SGSGNLEKKN ASASHMKNGF SRPLLKCSEE ARRNGNVAST SGKVPATLQA EASDLANFLT MDRNGGYRGS QTLLRSVISE KQELCFSVVS
0901: LLWHKLIASP ETQMSAESTS AHQGWRKVVD ALCDVVSASP AKASTAIVLQ AEKDLQPWIA RDDEEGQKMW RVNQRIVKLI AELMRNHDSP EALIILASAS
1001: DLLLRATDGM LVDGEACTLP QLELLEVTAR AIHLIVEWGD PGVAVADGLS NLLKCRLSPT IRCLSHASAH VRALSMSVLR DILNSGPLGS TKIIQGEQRN
1101: GIQSPNYQCA AANTVNWQAD VERCIDWEAR SRRATGMTLA FLTAAANELG CTLPC
0001: MASSSSSERW IDGLQFSSLL WPPPRDPQQH KDQVVAYVEY FGQFTSEQFP DDIAELVRHQ YPSTEKRLLD DVLAMFVLHH PEHGHAVILP IISCLIDGSL
0101: VYSKEAHPFA SFISLVCPSS ENDYSEQWAL ACGEILRILT HYNRPIYKTE QQNGDTERNC LSKATTSGSP TSEPKAGSPT QHERKPLRPL SPWISDILLA
0201: APLGIRSDYF RWCSGVMGKY AAGELKPPTI ASRGSGKHPQ LMPSTPRWAV ANGAGVILSV CDDEVARYET ATLTAVAVPA LLLPPPTTSL DEHLVAGLPA
0301: LEPYARLFHR YYAIATPSAT QRLLLGLLEA PPSWAPDALD AAVQLVELLR AAEDYASGVR LPRNWMHLHF LRAIGIAMSM RAGVAADAAA ALLFRILSQP
0401: ALLFPPLSQV EGVEIQHAPI GGYSSNYRKQ IEVPAAEATI EATAQGIASM LCAHGPEVEW RICTIWEAAY GLIPLNSSAV DLPEIIVATP LQPPILSWNL
0501: YIPLLKVLEY LPRGSPSEAC LMKIFVATVE TILSRTFPPE SSRELTRKAR SSFTTRSATK NLAMSELRAM VHALFLESCA GVELASRLLF VVLTVCVSHE
0601: AQSSGSKRPR SEYASTTENI EANQPVSNNQ TANRKSRNVK GQGPVAAFDS YVLAAVCALA CEVQLYPMIS GGGNFSNSAV AGTITKPVKI NGSSKEYGAG
0701: IDSAISHTRR ILAILEALFS LKPSSVGTPW SYSSSEIVAA AMVAAHISEL FRRSKALTHA LSGLMRCKWD KEIHKRASSL YNLIDVHSKV VASIVDKAEP
0801: LEAYLKNTPV QKDSVTCLNW KQENTCASTT CFDTAVTSAS RTEMNPRGNH KYARHSDEGS GRPSEKGIKD FLLDASDLAN FLTADRLAGF YCGTQKLLRS
0901: VLAEKPELSF SVVSLLWHKL IAAPEIQPTA ESTSAQQGWR QVVDALCNVV SATPAKAAAA VVLQAERELQ PWIAKDDEEG QKMWKINQRI VKVLVELMRN
1001: HDRPESLVIL ASASDLLLRA TDGMLVDGEA CTLPQLELLE ATARAIQPVL AWGPSGLAVV DGLSNLLKCR LPATIRCLSH PSAHVRALST SVLRDIMNQS
1101: SIPIKVTPKL PTTEKNGMNS PSYRFFNAAS IDWKADIQNC LNWEAHSLLS TTMPTQFLDT AARELGCTIS LSQ
0101: VYSKEAHPFA SFISLVCPSS ENDYSEQWAL ACGEILRILT HYNRPIYKTE QQNGDTERNC LSKATTSGSP TSEPKAGSPT QHERKPLRPL SPWISDILLA
0201: APLGIRSDYF RWCSGVMGKY AAGELKPPTI ASRGSGKHPQ LMPSTPRWAV ANGAGVILSV CDDEVARYET ATLTAVAVPA LLLPPPTTSL DEHLVAGLPA
0301: LEPYARLFHR YYAIATPSAT QRLLLGLLEA PPSWAPDALD AAVQLVELLR AAEDYASGVR LPRNWMHLHF LRAIGIAMSM RAGVAADAAA ALLFRILSQP
0401: ALLFPPLSQV EGVEIQHAPI GGYSSNYRKQ IEVPAAEATI EATAQGIASM LCAHGPEVEW RICTIWEAAY GLIPLNSSAV DLPEIIVATP LQPPILSWNL
0501: YIPLLKVLEY LPRGSPSEAC LMKIFVATVE TILSRTFPPE SSRELTRKAR SSFTTRSATK NLAMSELRAM VHALFLESCA GVELASRLLF VVLTVCVSHE
0601: AQSSGSKRPR SEYASTTENI EANQPVSNNQ TANRKSRNVK GQGPVAAFDS YVLAAVCALA CEVQLYPMIS GGGNFSNSAV AGTITKPVKI NGSSKEYGAG
0701: IDSAISHTRR ILAILEALFS LKPSSVGTPW SYSSSEIVAA AMVAAHISEL FRRSKALTHA LSGLMRCKWD KEIHKRASSL YNLIDVHSKV VASIVDKAEP
0801: LEAYLKNTPV QKDSVTCLNW KQENTCASTT CFDTAVTSAS RTEMNPRGNH KYARHSDEGS GRPSEKGIKD FLLDASDLAN FLTADRLAGF YCGTQKLLRS
0901: VLAEKPELSF SVVSLLWHKL IAAPEIQPTA ESTSAQQGWR QVVDALCNVV SATPAKAAAA VVLQAERELQ PWIAKDDEEG QKMWKINQRI VKVLVELMRN
1001: HDRPESLVIL ASASDLLLRA TDGMLVDGEA CTLPQLELLE ATARAIQPVL AWGPSGLAVV DGLSNLLKCR LPATIRCLSH PSAHVRALST SVLRDIMNQS
1101: SIPIKVTPKL PTTEKNGMNS PSYRFFNAAS IDWKADIQNC LNWEAHSLLS TTMPTQFLDT AARELGCTIS LSQ
Arabidopsis Description
GIProtein GIGANTEA [Source:UniProtKB/Swiss-Prot;Acc:Q9SQI2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.