Factsheet for TraesCS2B01G118000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G116300.1
TraesCS3B01G135400.1
TraesCS3D01G118200.2
TraesCS4A01G164000.1
TraesCS4A01G355900.1
TraesCS4B01G157500.1
TraesCS5A01G309300.1
TraesCS5B01G310000.1
TraesCS5B01G516200.1
TraesCS5D01G316300.1
TraesCS5D01G516300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G47500.1	TraesCS4A01G164000.1	AT1G68050.1	16002617
AT3G47500.1	TraesCS4B01G157500.1	AT1G68050.1	16002617
AT5G62430.1	TraesCS3A01G116300.1	AT1G22770.1	17872410
AT5G62430.1	TraesCS3B01G135400.1	AT1G22770.1	17872410
AT5G62430.1	TraesCS3D01G118200.2	AT1G22770.1	17872410
AT5G62430.1	TraesCS4A01G164000.1	AT1G68050.1	16002617
AT5G62430.1	TraesCS4B01G157500.1	AT1G68050.1	16002617
AT5G62430.1	TraesCS4A01G355900.1	AT5G51910.1	21798944
AT5G62430.1	TraesCS5A01G309300.1	AT5G51910.1	21798944
AT5G62430.1	TraesCS5B01G310000.1	AT5G51910.1	21798944
AT5G62430.1	TraesCS5B01G516200.1	AT5G51910.1	21798944
AT5G62430.1	TraesCS5D01G316300.1	AT5G51910.1	21798944
AT5G62430.1	TraesCS5D01G516300.1	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G100800.1	Wheat	nucleus	96.24	96.24
TraesCS2D01G100300.1	Wheat	mitochondrion, nucleus	96.66	92.42
HORVU2Hr1G017290.1	Barley	nucleus	91.44	92.21
OQU90492	Sorghum	nucleus	69.1	68.39
Os07t0685000-02	Rice	nucleus	67.64	68.07
Zm00001d022525_P001	Maize	nucleus	67.64	62.91
CDY69084	Canola	nucleus	24.22	42.34
CDY00286	Canola	nucleus	24.01	42.12
AT5G62430.1	Thale cress	nucleus	26.1	41.95
Bra010082.1-P	Field mustard	nucleus	23.38	41.79
CDY67518	Canola	nucleus	24.63	40.41
CDY69244	Canola	nucleus	24.43	40.07
Bra029261.1-P	Field mustard	nucleus	24.01	39.38
Bra018141.1-P	Field mustard	nucleus	34.03	38.17
CDY66672	Canola	nucleus	34.03	38.17
CDY47405	Canola	nucleus	33.82	37.76
AT3G47500.1	Thale cress	nucleus	35.07	37.5
VIT_17s0000g06310.t01	Wine grape	nucleus	35.91	36.36
KRH03487	Soybean	nucleus	35.07	35.67
TraesCS3B01G210300.1	Wheat	nucleus	39.87	35.44
KRH54567	Soybean	nucleus	33.19	34.72
PGSC0003DMT400050273	Potato	nucleus	36.33	34.59
KRH56903	Soybean	nucleus	34.03	34.46
VIT_01s0026g02580.t01	Wine grape	nucleus	34.03	34.17
Solyc03g115940.2.1	Tomato	nucleus	35.7	34.13
KRH63324	Soybean	nucleus	33.4	34.04
Solyc06g069760.2.1	Tomato	nucleus	33.82	32.93
KRH18471	Soybean	nucleus	33.4	32.79
PGSC0003DMT400083080	Potato	nucleus	33.61	32.72
TraesCS4B01G286400.1	Wheat	nucleus	28.81	31.87
KRG93541	Soybean	nucleus	24.84	30.91
TraesCS1B01G347400.1	Wheat	plastid	12.53	28.71
TraesCS3B01G329700.1	Wheat	nucleus	11.9	27.94
TraesCS2B01G592900.1	Wheat	nucleus	11.27	26.09
TraesCS2B01G592600.1	Wheat	nucleus	9.6	24.73
TraesCS3B01G305400.1	Wheat	nucleus	7.93	24.68
TraesCS3B01G125100.1	Wheat	nucleus	10.86	22.61
TraesCS2B01G592800.1	Wheat	nucleus, plastid	9.81	22.17
TraesCS2B01G592700.1	Wheat	nucleus	10.02	21.62
TraesCS4B01G081500.1	Wheat	nucleus	11.9	21.51
TraesCS5B01G249800.1	Wheat	nucleus	11.9	20.28

Protein Annotations

EnsemblPlants:TraesCS2B01G118000.1	EnsemblPlantsGene:TraesCS2B01G118000	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003851	InterPro:Znf_Dof	PANTHER:PTHR31089	PANTHER:PTHR31089:SF6	PFAM:PD007478	PFAM:PF02701
PFscan:PS50884	ScanProsite:PS01361	SEG:seg	MapMan:15.5.1.5	:	:

Description

No Description!

Coordinates

chr2B:-:81760214..81763235

Molecular Weight (calculated)

50920.6 Da

IEP (calculated)

6.171

GRAVY (calculated)

-0.629

Length

479 amino acids

Sequence
(BLAST)

001: MELAGAAHPQ PPESDVAPPR TPPQAPAEDS CKDTGDTRIT EENSCTPPDL NLSQPNNSGL NSSSACENQT SNSDEMTEPE STLEAAKTKG DGSNKEKVLK
101: KPDKILPCPR CNSMDTKFCY YNNYNIHQPR HFCRGCQRYW TAGGSMRNLP VGAGRRKSKS SGTNCNGILI PGSSLAAPGG DASVIPLPIK ENQPAVLFGS
201: DATLPNSMAS LLRVEEQNKN SNPASTAHPR NGENQTCPPS AATSDNPRIE SVKVAVGVHQ NGITGDCNGV TPMPPIPCFP GPPFMYPWNP AWNGVPAMAA
301: PVCPVPAEPA NCSENGHGGN IQWNFPSMVP MPGFCGPPIP FPLMPPSVWP LVSPWPNGAW SAPWLGPGYS MSAAPPTSSS TCSDSGSPVL GKHPRDSDPQ
401: GGEKAEKSLW IPKTLRIDDP DEAAKSSIWT TLGIEPGERG MFRPFQPKSG GREQMSNAAR VMQANPAAQS RFASFQEMT

Best Arabidopsis Sequence Match ( AT3G47500.1 )
(BLAST)

001: MMMETRDPAI KLFGMKIPFP SVFESAVTVE DDEEDDWSGG DDKSPEKVTP ELSDKNNNNC NDNSFNNSKP ETLDKEEATS TDQIESSDTP EDNQQTTPDG
101: KTLKKPTKIL PCPRCKSMET KFCYYNNYNI NQPRHFCKAC QRYWTAGGTM RNVPVGAGRR KNKSSSSHYR HITISEALEA ARLDPGLQAN TRVLSFGLEA
201: QQQHVAAPMT PVMKLQEDQK VSNGARNRFH GLADQRLVAR VENGDDCSSG SSVTTSNNHS VDESRAQSGS VVEAQMNNNN NNNMNGYACI PGVPWPYTWN
301: PAMPPPGFYP PPGYPMPFYP YWTIPMLPPH QSSSPISQKC SNTNSPTLGK HPRDEGSSKK DNETERKQKA GCVLVPKTLR IDDPNEAAKS SIWTTLGIKN
401: EAMCKAGGMF KGFDHKTKMY NNDKAENSPV LSANPAALSR SHNFHEQI

Arabidopsis Description

CDF3Cyclic dof factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFV3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.