Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra022568.1-P | |
| Bra024536.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G62430.1 | Bra024536.1-P | AT1G22770.1 | 17872410 |
| AT5G62430.1 | Bra022568.1-P | AT5G51910.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00286 | Canola | nucleus | 96.64 | 94.87 |
| CDY69084 | Canola | nucleus | 89.93 | 87.96 |
| Bra029261.1-P | Field mustard | nucleus | 79.48 | 72.95 |
| AT5G62430.1 | Thale cress | nucleus | 76.49 | 68.79 |
| Bra030124.1-P | Field mustard | nucleus | 20.15 | 44.26 |
| Bra018141.1-P | Field mustard | nucleus | 63.06 | 39.58 |
| Bra032292.1-P | Field mustard | nucleus | 21.64 | 33.14 |
| KRH54567 | Soybean | nucleus | 56.34 | 32.97 |
| Bra010848.1-P | Field mustard | nucleus | 21.27 | 32.57 |
| Bra021895.1-P | Field mustard | nucleus | 20.15 | 32.14 |
| KRH63324 | Soybean | nucleus | 55.6 | 31.7 |
| KRH03487 | Soybean | nucleus | 55.6 | 31.63 |
| KRH56903 | Soybean | nucleus | 55.6 | 31.5 |
| VIT_17s0000g06310.t01 | Wine grape | nucleus | 54.85 | 31.08 |
| VIT_01s0026g02580.t01 | Wine grape | nucleus | 54.85 | 30.82 |
| Bra024683.1-P | Field mustard | nucleus | 37.31 | 30.58 |
| Bra028437.1-P | Field mustard | nucleus | 43.28 | 29.0 |
| Bra025655.1-P | Field mustard | nucleus | 46.27 | 27.87 |
| Bra003994.1-P | Field mustard | nucleus | 39.55 | 27.46 |
| Solyc03g115940.2.1 | Tomato | nucleus | 50.75 | 27.15 |
| Bra004396.1-P | Field mustard | nucleus | 36.94 | 26.9 |
| PGSC0003DMT400050273 | Potato | nucleus | 49.63 | 26.44 |
| PGSC0003DMT400083080 | Potato | nucleus | 47.39 | 25.81 |
| Solyc06g069760.2.1 | Tomato | nucleus | 47.39 | 25.81 |
| TraesCS4A01G017700.1 | Wheat | nucleus | 41.04 | 25.17 |
| Bra016286.1-P | Field mustard | nucleus | 31.34 | 25.07 |
| TraesCS4B01G286400.1 | Wheat | nucleus | 40.3 | 24.94 |
| Os07t0685000-02 | Rice | nucleus | 44.03 | 24.79 |
| EER95426 | Sorghum | nucleus | 39.18 | 24.76 |
| OQU90492 | Sorghum | nucleus | 44.4 | 24.59 |
| Os03t0169600-01 | Rice | nucleus | 40.3 | 24.55 |
| HORVU4Hr1G074990.1 | Barley | nucleus | 40.3 | 24.43 |
| TraesCS4D01G285100.1 | Wheat | nucleus | 40.3 | 24.43 |
| Bra036082.1-P | Field mustard | nucleus | 19.78 | 23.87 |
| TraesCS2A01G100800.1 | Wheat | nucleus | 42.54 | 23.8 |
| HORVU2Hr1G017290.1 | Barley | nucleus | 41.79 | 23.58 |
| Bra031269.1-P | Field mustard | nucleus | 16.79 | 23.56 |
| Bra023888.1-P | Field mustard | nucleus | 17.54 | 23.5 |
| TraesCS2B01G118000.1 | Wheat | nucleus | 41.79 | 23.38 |
| Zm00001d027846_P001 | Maize | nucleus | 37.31 | 23.15 |
| Bra014297.1-P | Field mustard | nucleus | 17.16 | 23.0 |
| Bra001822.1-P | Field mustard | nucleus | 17.54 | 22.93 |
| TraesCS2D01G100300.1 | Wheat | mitochondrion, nucleus | 42.16 | 22.55 |
| Zm00001d022525_P001 | Maize | nucleus | 42.16 | 21.94 |
| Bra030010.1-P | Field mustard | nucleus | 19.03 | 21.7 |
| Bra030423.1-P | Field mustard | nucleus | 14.93 | 21.62 |
| Bra011800.1-P | Field mustard | nucleus, plastid | 19.4 | 21.49 |
| Bra012901.1-P | Field mustard | nucleus | 19.03 | 21.07 |
| Bra012119.1-P | Field mustard | nucleus | 17.16 | 20.91 |
| Bra015609.1-P | Field mustard | nucleus | 17.16 | 20.63 |
| Bra037135.1-P | Field mustard | nucleus | 16.04 | 20.28 |
Protein Annotations
| MapMan:15.5.1.5 | EnsemblPlantsGene:Bra010082 | EnsemblPlants:Bra010082.1 | EnsemblPlants:Bra010082.1-P | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR003851 | UniProt:M4D0T3 | PFAM:PD007478 | PFAM:PF02701 | ScanProsite:PS01361 | PFscan:PS50884 |
| PANTHER:PTHR31089 | PANTHER:PTHR31089:SF7 | UniParc:UPI000253F6DB | InterPro:Znf_Dof | SEG:seg | : |
Description
AT5G62430 (E=6e-053) CDF1 | CDF1 (CYCLING DOF FACTOR 1); DNA binding / protein binding / transcription factor
Coordinates
chrA06:-:19261021..19262367
Molecular Weight (calculated)
30228.6 Da
IEP (calculated)
8.464
GRAVY (calculated)
-0.774
Length
268 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIHLSTVLE AEEDGISAEK SDPILVAQNQ KETLTDQVEK DKTLKKPTKI IPCPRCNSME TKFCYYNNYN VNQPRHFCKA CQRCWTSGGT MRSVPVGAGR
101: RKNKNNSSSS SHNYQHATIS ETDGPVLNFT HGDDQKVSDN RLMHSWPYMW NPGFYPVYPY WNVPMLSSSP NSSPNSTLGK HSRDEDETIM PKQSYGSVLV
201: PKTLRVDDPN EAAKSSIWTT LGIKNEVMFK GFDSKKEVKI SKEETETSLV LCANPAALSR SANFHERL
101: RKNKNNSSSS SHNYQHATIS ETDGPVLNFT HGDDQKVSDN RLMHSWPYMW NPGFYPVYPY WNVPMLSSSP NSSPNSTLGK HSRDEDETIM PKQSYGSVLV
201: PKTLRVDDPN EAAKSSIWTT LGIKNEVMFK GFDSKKEVKI SKEETETSLV LCANPAALSR SANFHERL
001: MLETKDPAIK LFGMKIPFPT VLEVADEEEE KNQNKTLTDQ SEKDKTLKKP TKILPCPRCN SMETKFCYYN NYNVNQPRHF CKACQRYWTS GGTMRSVPIG
101: AGRRKNKNNS PTSHYHHVTI SETNGPVLSF SLGDDQKVSS NRFGNQKLVA RIENNDERSN NNTSNGLNCF PGVSWPYTWN PAFYPVYPYW SMPVLSSPVS
201: SSPTSTLGKH SRDEDETVKQ KQRNGSVLVP KTLRIDDPNE AAKSSIWTTL GIKNEVMFNG FGSKKEVKLS NKEETETSLV LCANPAALSR SINFHEQM
101: AGRRKNKNNS PTSHYHHVTI SETNGPVLSF SLGDDQKVSS NRFGNQKLVA RIENNDERSN NNTSNGLNCF PGVSWPYTWN PAFYPVYPYW SMPVLSSPVS
201: SSPTSTLGKH SRDEDETVKQ KQRNGSVLVP KTLRIDDPNE AAKSSIWTTL GIKNEVMFNG FGSKKEVKLS NKEETETSLV LCANPAALSR SINFHEQM
Arabidopsis Description
CDF1Cyclic dof factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W1E3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.