Factsheet for Bra011800.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 6
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75689	Canola	nucleus, plastid	98.76	98.76
AT4G38000.1	Thale cress	nucleus, plastid	74.38	73.17
Bra030124.1-P	Field mustard	nucleus	18.59	36.89
Solyc06g062520.1.1	Tomato	nucleus	26.45	33.33
GSMUA_Achr7P09590_001	Banana	nucleus	26.45	32.65
Bra031269.1-P	Field mustard	nucleus	23.97	30.37
Bra030423.1-P	Field mustard	nucleus	23.14	30.27
PGSC0003DMT400006421	Potato	nucleus	25.62	29.81
Bra032292.1-P	Field mustard	nucleus	21.07	29.14
Bra001822.1-P	Field mustard	nucleus	24.38	28.78
GSMUA_Achr10P...	Banana	nucleus	26.86	28.51
Bra023888.1-P	Field mustard	nucleus	23.55	28.5
Bra014297.1-P	Field mustard	nucleus	22.73	27.5
GSMUA_Achr4P30860_001	Banana	nucleus	26.03	26.92
Bra010848.1-P	Field mustard	nucleus	19.42	26.86
GSMUA_Achr2P15700_001	Banana	nucleus	24.79	26.79
Bra036082.1-P	Field mustard	nucleus	24.38	26.58
Bra015609.1-P	Field mustard	nucleus	23.14	25.11
Bra037135.1-P	Field mustard	nucleus	21.9	25.0
Bra021895.1-P	Field mustard	nucleus	17.36	25.0
Bra012119.1-P	Field mustard	nucleus	22.31	24.55
Bra012901.1-P	Field mustard	nucleus	24.38	24.38
Bra030010.1-P	Field mustard	nucleus	23.55	24.26
Bra029261.1-P	Field mustard	nucleus	24.79	20.55
Bra010082.1-P	Field mustard	nucleus	21.49	19.4
Bra024683.1-P	Field mustard	nucleus	22.73	16.82
Bra004396.1-P	Field mustard	nucleus	25.21	16.58
Bra018141.1-P	Field mustard	nucleus	28.51	16.16
Bra003994.1-P	Field mustard	nucleus	25.62	16.06
Bra028437.1-P	Field mustard	nucleus	24.79	15.0
Bra025655.1-P	Field mustard	nucleus	26.86	14.61
Bra016286.1-P	Field mustard	nucleus	19.42	14.03

Protein Annotations

MapMan:15.5.1.5	EnsemblPlantsGene:Bra011800	EnsemblPlants:Bra011800.1	EnsemblPlants:Bra011800.1-P	GO:GO:0000003	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009791	GO:GO:0009838	GO:GO:0009908	GO:GO:0009987	GO:GO:0010227
GO:GO:0045893	InterPro:IPR003851	UniProt:M4D5P3	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361
PFscan:PS50884	PANTHER:PTHR31992	PANTHER:PTHR31992:SF61	UniParc:UPI000254640D	InterPro:Znf_Dof	SEG:seg

Description

AT4G38000 (E=8e-078) | Dof-type zinc finger domain-containing protein

Coordinates

chrA01:-:446168..446896

Molecular Weight (calculated)

26995.8 Da

IEP (calculated)

9.991

GRAVY (calculated)

-0.709

Length

242 amino acids

Sequence
(BLAST)

001: MMTSSHQSHT TSFNPRRIKA KAKPPHQISR MGPSPAAQPV LKCPRCDSVN TKFCYYNNYS LSQPRHYCKN CRRYWTRGGS LRNVPIGGST RNKNKPSSLQ
101: VISSPPPIVA SLSSHELVDG FRMNRAMIDP PATAFPGGFS GYMFSLDPNY NLASSSIESL SSLNQDLHQK LQQQRLFTSM FQQDSPPVMF HNVELLPPST
201: ATTEWAFDRS AIRGATSGSN ENNGEREGNL GSWYYNPNNS MP

Best Arabidopsis Sequence Match ( AT4G38000.1 )
(BLAST)

001: MMTSSHQSNT TGFKPRRIKT TAKPPRQINN KEPSPATQPV LKCPRCDSVN TKFCYYNNYS LSQPRHYCKN CRRYWTRGGA LRNVPIGGST RNKNKPCSLQ
101: VISSPPLFSN GTSSASRELV RNHPSTAMMM MSSGGFSGYM FPLDPNFNLA SSSIESLSSF NQDLHQKLQQ QRLVTSMFLQ DSLPVNEKTV MFQNVELIPP
201: STVTTDWVFD RFATGGGATS GNHEDNDDGE GNLGNWFHNA NNNALL

Arabidopsis Description

DOF4.7Dof zinc finger protein-like [Source:UniProtKB/TrEMBL;Acc:Q0WQS4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.