Factsheet for Bra030010.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83127	Canola	nucleus	100.0	100.0
CDY54696	Canola	nucleus	99.15	97.9
Bra012901.1-P	Field mustard	nucleus	80.85	78.51
Bra036082.1-P	Field mustard	nucleus	72.77	77.03
AT3G50410.1	Thale cress	nucleus	78.72	73.12
Bra012119.1-P	Field mustard	nucleus	54.04	57.73
Bra037135.1-P	Field mustard	nucleus	51.91	57.55
KRH70017	Soybean	nucleus	50.21	50.43
KRH08373	Soybean	nucleus	48.09	47.88
Bra015609.1-P	Field mustard	nucleus	34.89	36.77
Bra031269.1-P	Field mustard	nucleus	29.36	36.13
Bra030124.1-P	Field mustard	nucleus	18.72	36.07
Bra023888.1-P	Field mustard	nucleus	28.51	33.5
Bra001822.1-P	Field mustard	nucleus	28.94	33.17
Bra030423.1-P	Field mustard	nucleus	25.96	32.97
TraesCS3D01G108600.1	Wheat	nucleus	31.91	32.61
TraesCS3B01G125100.1	Wheat	nucleus	31.49	32.17
Bra014297.1-P	Field mustard	nucleus	27.23	32.0
Zm00001d039482_P001	Maize	nucleus	30.64	31.17
TraesCS3A01G106500.1	Wheat	nucleus	31.49	31.09
KXG31638	Sorghum	nucleus	30.64	30.64
Bra032292.1-P	Field mustard	nucleus	20.43	27.43
Bra010848.1-P	Field mustard	nucleus	20.0	26.86
Bra021895.1-P	Field mustard	nucleus	18.3	25.6
Bra011800.1-P	Field mustard	nucleus, plastid	24.26	23.55
Bra029261.1-P	Field mustard	nucleus	24.26	19.52
Bra010082.1-P	Field mustard	nucleus	21.7	19.03
Bra024683.1-P	Field mustard	nucleus	25.53	18.35
Bra016286.1-P	Field mustard	nucleus	24.26	17.01
Bra003994.1-P	Field mustard	nucleus	25.96	15.8
Bra018141.1-P	Field mustard	nucleus	27.66	15.22
Bra004396.1-P	Field mustard	nucleus	23.4	14.95
Bra028437.1-P	Field mustard	nucleus	23.4	13.75
Bra025655.1-P	Field mustard	nucleus	24.26	12.81

Protein Annotations

MapMan:15.5.1.5	EnsemblPlantsGene:Bra030010	EnsemblPlants:Bra030010.1	EnsemblPlants:Bra030010.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003851	UniProt:M4EMJ0	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884
PANTHER:PTHR31992	PANTHER:PTHR31992:SF12	UniParc:UPI0002544521	InterPro:Znf_Dof	SEG:seg	:

Description

AT3G50410 (E=3e-084) OBP1 | OBP1 (OBF BINDING PROTEIN 1); DNA binding / protein binding / transcription factor

Coordinates

chrA01:+:15730895..15731602

Molecular Weight (calculated)

24600.5 Da

IEP (calculated)

9.050

GRAVY (calculated)

-0.339

Length

235 amino acids

Sequence
(BLAST)

001: MTTTSNTDAM RLHGVITANP PPATEQLPCP RCNSTNTKFC YYNNYNFSQP RHFCKSCRRY WTHGGTLRDI PVGGGTRKAA KRSRTCSSSA GSRSVPLQAT
101: PVLFPQSSIS NGVSHTVTAP LDGKGSALSL SGSFTSLLNQ NATATHGSGS VLGIGLGSGY DDVSFGLGRA VWPFSTVGDA GTTNVGSNGG HQGVVTIPAT
201: WQFEGLETNN AGGFVSGEYF AWPDLSITTS GNSHK

Best Arabidopsis Sequence Match ( AT3G50410.1 )
(BLAST)

001: MPTSDSGEPR RIAMKPNGVT VPISDQQEQL PCPRCDSSNT KFCYYNNYNF SQPRHFCKAC RRYWTHGGTL RDVPVGGGTR KSAKRSRTCS NSSSSSVSGV
101: VSNSNGVPLQ TTPVLFPQSS ISNGVTHTVT ESDGKGSALS LCGSFTSTLL NHNAAATATH GSGSVIGIGG FGIGLGSGFD DVSFGLGRAM WPFSTVGTAT
201: TTNVGSNGGH HAVPMPATWQ FEGLESNAGG GFVSGEYFAW PDLSITTPGN SLK

Arabidopsis Description

DOF3.4OBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFT5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.