Factsheet for Bra037135.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18628	Canola	nucleus	98.58	98.58
Bra012119.1-P	Field mustard	nucleus	81.6	78.64
AT5G66940.1	Thale cress	nucleus	76.89	72.44
Bra012901.1-P	Field mustard	nucleus	62.26	54.55
Bra030010.1-P	Field mustard	nucleus	57.55	51.91
Bra036082.1-P	Field mustard	nucleus	52.36	50.0
PGSC0003DMT400026137	Potato	nucleus	47.17	41.67
VIT_03s0063g01350.t01	Wine grape	nucleus	33.02	40.46
Solyc02g090220.2.1	Tomato	nucleus	45.28	37.21
Bra015609.1-P	Field mustard	nucleus	35.38	33.63
Bra030124.1-P	Field mustard	nucleus	19.34	33.61
Bra031269.1-P	Field mustard	nucleus	28.77	31.94
Bra030423.1-P	Field mustard	nucleus	27.83	31.89
Bra014297.1-P	Field mustard	nucleus	27.83	29.5
Bra023888.1-P	Field mustard	nucleus	27.83	29.5
Bra001822.1-P	Field mustard	nucleus	28.3	29.27
TraesCS3B01G125100.1	Wheat	nucleus	31.6	29.13
TraesCS3D01G108600.1	Wheat	nucleus	31.6	29.13
Zm00001d039482_P001	Maize	nucleus	31.6	29.0
KXG31638	Sorghum	nucleus	31.6	28.51
TraesCS3A01G106500.1	Wheat	nucleus	30.66	27.31
Bra032292.1-P	Field mustard	nucleus	21.7	26.29
Bra010848.1-P	Field mustard	nucleus	20.28	24.57
Bra021895.1-P	Field mustard	nucleus	19.34	24.4
Bra011800.1-P	Field mustard	nucleus, plastid	25.0	21.9
Bra029261.1-P	Field mustard	nucleus	23.58	17.12
Bra016286.1-P	Field mustard	nucleus	25.47	16.12
Bra010082.1-P	Field mustard	nucleus	20.28	16.04
Bra024683.1-P	Field mustard	nucleus	24.53	15.9
Bra003994.1-P	Field mustard	nucleus	26.89	14.77
Bra004396.1-P	Field mustard	nucleus	24.53	14.13
Bra018141.1-P	Field mustard	nucleus	26.89	13.35
Bra028437.1-P	Field mustard	nucleus	23.11	12.25
Bra025655.1-P	Field mustard	nucleus	25.0	11.91

Protein Annotations

MapMan:15.5.1.5	EnsemblPlantsGene:Bra037135	EnsemblPlants:Bra037135.1	EnsemblPlants:Bra037135.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003851	UniProt:M4F7S4	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884
PANTHER:PTHR31992	PANTHER:PTHR31992:SF12	UniParc:UPI0002541D1C	InterPro:Znf_Dof	SEG:seg	:

Description

AT5G66940 (E=1e-074) | Dof-type zinc finger domain-containing protein

Coordinates

chrA09:-:4308628..4309266

Molecular Weight (calculated)

22574.3 Da

IEP (calculated)

9.199

GRAVY (calculated)

-0.452

Length

212 amino acids

Sequence
(BLAST)

001: MPSDLNDSRR VTTKLPHGGA AAEQQEQLPC PRCESTNTKF CYYNNYNFSQ PRHFCKSCRR YWTHGGTLRD IPVGGVSRKT SKRSRAFSSV AAAGSRNFPL
101: QATPVLFPPS SYGGGKGNTS SLYGGFTTLL GNNAAASRDG PGGGFNGPEG FGLGLGHGLY LDEVRFGQGI TAWPFSTGAT DAATSHVVPI HATWQLEGTE
201: SRVGFVAGDY LA

Best Arabidopsis Sequence Match ( AT5G66940.1 )
(BLAST)

001: MPSEFSESRR VPKIPHGQGG SVAIPTDQQE QLSCPRCEST NTKFCYYNNY NFSQPRHFCK SCRRYWTHGG TLRDIPVGGV SRKSSKRSRT YSSAATTSVV
101: GSRNFPLQAT PVLFPQSSSN GGITTAKGSA SSFYGGFSSL INYNAAVSRN GPGGGFNGPD AFGLGLGHGS YYEDVRYGQG ITVWPFSSGA TDAATTTSHI
201: AQIPATWQFE GQESKVGFVS GDYVA

Arabidopsis Description

DOF5.8Dof zinc finger protein DOF5.8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGD6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.